Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001779`

染色体: Chr05 坐标: 17516995-17519889 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001779`
名称	SmilChr05G001779
描述	receptor protein kinase-like protein ZAR1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	17516995 - 17519889 / `+`

ID 对照

NCBI Gene ID	`LOC130986454`
GeneID	`130986454`
locus_tag	`-`
NCBI Name	`LOC130986454`
原始查询	`SmilChr05G001779`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor protein kinase-like protein ZAR1
产物	receptor protein kinase-like protein ZAR1
Arabidopsis	`AT2G01210` (AT2G01210) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:814649] identity=66.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0514700` - identity=61.9; qcov=0.971; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:130986454

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057765850.1`
2	Nucleus	细胞核	0.00000	`XP_057765850.1`
3	Chromosome	染色体	0.00000	`XP_057765850.1`
4	Centromere	着丝粒	0.00000	`XP_057765850.1`
5	Chromatin	染色质	0.00000	`XP_057765850.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:17517493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B37,B73,C21,C31
`Chr5:17517841`	`G`	`GTT`	2bp_insertion	frameshift_variant	2	B80,B99
`Chr5:17517841`	`G`	`GTT`	2bp_insertion	CDS_variant	2	B80,B99
`Chr5:17517843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,B99
`Chr5:17518302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B126,B51,B52,B62,B81
`Chr5:17518621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:17518630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C28
`Chr5:17518766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr5:17518789`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B77,C71
`Chr5:17518835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr5:17518973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr5:17518979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765850.1

713 aa

356

713

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 25-64 aa PF00560 LRR_1 93-112 aa PF00560 LRR_1 117-138 aa PF00560 LRR_1 141-161 aa PF00560 LRR_1 164-185 aa PF00560 LRR_1 190-211 aa PF00560 LRR_1 218-236 aa PF00069 Pkinase 409-700 aa PF07714 PK_Tyr_Ser-Thr 409-702 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765850.1`	Pfam	`PF08263`	LRRNT_2	Family	25	64	2.9e-15	57.0	Leucine rich repeat N-terminal domain
`XP_057765850.1`	Pfam	`PF00560`	LRR_1	Repeat	93	112	4.9e-19	65.1	Leucine Rich Repeat
`XP_057765850.1`	Pfam	`PF00560`	LRR_1	Repeat	117	138	4.9e-19	65.1	Leucine Rich Repeat
`XP_057765850.1`	Pfam	`PF00560`	LRR_1	Repeat	141	161	4.9e-19	65.1	Leucine Rich Repeat
`XP_057765850.1`	Pfam	`PF00560`	LRR_1	Repeat	164	185	4.9e-19	65.1	Leucine Rich Repeat
`XP_057765850.1`	Pfam	`PF00560`	LRR_1	Repeat	190	211	4.9e-19	65.1	Leucine Rich Repeat
`XP_057765850.1`	Pfam	`PF00560`	LRR_1	Repeat	218	236	4.9e-19	65.1	Leucine Rich Repeat
`XP_057765850.1`	Pfam	`PF00069`	Pkinase	Domain	409	700	1.2e-30	107.6	Protein kinase domain
`XP_057765850.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	409	702	1.7e-26	93.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909867.1
CGTAACTGGCATTTCCCGCTAGGGAGTTGACACAGTACACTGCAAATTTTTACCAAGATGGATGAATACGGAGCTTCCTTTTCGTTTTTTGCATTGTTGTTTTCTCTCTCTGTAAACTAATCCATTTTCCCAAGGCCCCTTTGCTTAGCTGAAAACAACTTTACCTTTTCCCCAAAACGACTTTGTTTTGTTTTTGCTCTTCTCCATACTCCATCCATCCCCACTGTCAAAGCTTTCACACACCCACACACACACTCGCC...

CDS

1 records

下载 CDS FASTA

LOC130986454
ATGTTAGCTTTTCTTGCTTTCTTGCTTTTAATTTTGCTTAGCTTCTGTAATGTTGCTGTTGTGAGTTCTGTAAACGAAGAAGGGATAGCTCTGTTATCATTCAAGAATTCCATTACAGTAGACCCTGAAGGAACGCTTAGTAATTGGAACACCTCTGATGAAACCCCATGTTCTTGGAATGGCATTACATGCAAAGAACAGAGGGTTATCTCTCTCAGCATTCCCAAAAAAAAACTCTCTGGGTTTCTCTCTCCCTCTCT...

Protein

1 records

下载 Protein FASTA

XP_057765850.1
MLAFLAFLLLILLSFCNVAVVSSVNEEGIALLSFKNSITVDPEGTLSNWNTSDETPCSWNGITCKEQRVISLSIPKKKLSGFLSPSLGSLSELRHLNLRSNRLFGGLPSDLFKVVGLQSLVLYGNSFSGVLPFELGNLDYLITLDLSENFFNGSLPSSLVKCKRLRNLDLRQNNFSGSLPNEFGKNLALLEKLDLSHNSFSGSIPGDLGYLSNLQGTVDLSYNKFNGSIPSSLGNLPEKVYIDLTYNNLRGPIPQNGALV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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