Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001790`

染色体: Chr05 坐标: 17613984-17616338 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001790`
名称	SmilChr05G001790
描述	zinc finger CCCH domain-containing protein 15-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	17613984 - 17616338 / `+`

ID 对照

NCBI Gene ID	`LOC130986465`
GeneID	`130986465`
locus_tag	`-`
NCBI Name	`LOC130986465`
原始查询	`SmilChr05G001790`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 15-like
产物	zinc finger CCCH domain-containing protein 15-like
Arabidopsis	`AT1G68200` (AT1G68200) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:843149] identity=51.4; qcov=0.793; evalue=2.8e-67; confidence=high
Rice	`Os05g0576300` (OsC3H39) - identity=44.2; qcov=0.796; evalue=1.5e-58; confidence=medium
GO	GO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00642 (zf-CCCH); PF18044 (zf-CCCH_4); PF18345 (zf_CCCH_4)
InterPro	-
eggNOG	-
NR	GeneID:130986465

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057765864.1`
2	Nucleus	细胞核	0.80000	`XP_057765864.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057765864.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057765864.1`
5	P-body	P-body	0.20000	`XP_057765864.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:17614609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:17614645`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr5:17614706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:17614791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B52,C29,C7
`Chr5:17614817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C71,D11
`Chr5:17614833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr5:17614836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr5:17615000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B91,C5
`Chr5:17615070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B57,C24,C68
`Chr5:17615689`	`G`	`GA`	1bp_insertion	frameshift_variant	12	B122,B14,B23,B6,B63,B73,B78,B93,C15,C20,C30,C6
`Chr5:17615706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,B73,C57
`Chr5:17615710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B72,C25,C43,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765864.1

324 aa

162

324

zf-CCCH

zf-CCCH_4

zf_CCCH_4

PF00642 zf-CCCH 239-264 aa PF18044 zf-CCCH_4 243-263 aa PF18345 zf_CCCH_4 244-263 aa

XP_057765865.1

324 aa

162

324

zf-CCCH

zf-CCCH_4

zf_CCCH_4

PF00642 zf-CCCH 239-264 aa PF18044 zf-CCCH_4 243-263 aa PF18345 zf_CCCH_4 244-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765864.1`	Pfam	`PF00642`	zf-CCCH	Family	239	264	4e-17	62.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765864.1`	Pfam	`PF18044`	zf-CCCH_4	Domain	243	263	2.8e-11	43.6	CCCH-type zinc finger
`XP_057765864.1`	Pfam	`PF18345`	zf_CCCH_4	Domain	244	263	4.6e-08	33.6	Zinc finger domain
`XP_057765865.1`	Pfam	`PF00642`	zf-CCCH	Family	239	264	4e-17	62.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765865.1`	Pfam	`PF18044`	zf-CCCH_4	Domain	243	263	2.8e-11	43.6	CCCH-type zinc finger
`XP_057765865.1`	Pfam	`PF18345`	zf_CCCH_4	Domain	244	263	4.6e-08	33.6	Zinc finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909881.1
CAATCGAAGAGCGATTGCCATGCAAGGGCACGTCGCGTCCGATGCAATGAGCTGAAGCTCAACTCAACGTATAAATGTAGGCTTCTTCTTCATCCTCCCCACTTCTCAATTTTCTGCTGCTCTCTCTACAAAAGAAAATCCTCTCTCTCGCGTATAGCTACAGAAGGTATTGTCAAAGATCAATTTGAAGCTTGCGCATGAAGTTTGATTATTAATCAGGAACTATGCAGAGAGAAATCTCAATCTCATCCGGCATCTCC...

XM_057909882.1
AATCGAAGAGCGATTGCCATGCAAGGGCACGTCGCGTCCGATGCAATGAGCTGAAGCTCAACTCAACGTATAAATGTAGGCTTCTTCTTCATCCTCCCCACTTCTCAATTTTCTGCTGCTCTCTCTACAAAAGAAAATCCTCTCTCTCGCGTATAGCTACAGAAGGTATTGTCAAAGATCAATTTGAAGCTTGCGCATGAAGTTTGATTATTAATCAGAGCTCAGTGCGCTTAATTCATATGCACCGCGTATAGGAACTA...

CDS

2 records

下载 CDS FASTA

LOC130986465
ATGCAGAGAGAAATCTCAATCTCATCCGGCATCTCCACTCTGCCTTTCAACGGCGAATACGATTTCGCGCCGTCGATGTACTCGTCAATTTTCCCGCCAAAGGATTCGTCGATCCTCGAAAATTACCTACACGACGGATCCTCTAATTTCTCTTCCACGGAGAGTGAGAATGCCCTAGCGCCGAAATTGCCCCAATTCCAGCAGCTGCTGAATCAGGACTTGACGAACCGCCACCGGATGGTGATGTCGCGCCTCCGTGG...

Protein

2 records

下载 Protein FASTA

XP_057765864.1
MQREISISSGISTLPFNGEYDFAPSMYSSIFPPKDSSILENYLHDGSSNFSSTESENALAPKLPQFQQLLNQDLTNRHRMVMSRLRGVAKEAQTLRQENVNLKMANLDLYNRLNRLHNSSPFRGADADPGLDNLVDRLLKMDMEDEGTSENEAVAQSPTSVMDSGQGGLGEKRVHLPKSISVRSNGYLKAARAGGSGGGSGRDGPKVVKASTENNGTQKVYVKGGEQAVELEVYNQGMFKTELCNKWQQTGACPYGDNCQ...

XP_057765865.1
MQREISISSGISTLPFNGEYDFAPSMYSSIFPPKDSSILENYLHDGSSNFSSTESENALAPKLPQFQQLLNQDLTNRHRMVMSRLRGVAKEAQTLRQENVNLKMANLDLYNRLNRLHNSSPFRGADADPGLDNLVDRLLKMDMEDEGTSENEAVAQSPTSVMDSGQGGLGEKRVHLPKSISVRSNGYLKAARAGGSGGGSGRDGPKVVKASTENNGTQKVYVKGGEQAVELEVYNQGMFKTELCNKWQQTGACPYGDNCQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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