当前解析结果
SmilChr05G001794| 统一新 Gene ID | SmilChr05G001794 |
|---|---|
| 名称 | SmilChr05G001794 |
| 描述 | wall-associated receptor kinase-like 6 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17665656 - 17715627 / + |
| NCBI Gene ID | LOC130986455 |
|---|---|
| GeneID | 130986455 |
| locus_tag | - |
| NCBI Name | LOC130986455 |
| 原始查询 | SmilChr05G001794 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 6 |
| 产物 | wall-associated receptor kinase-like 6 |
| Arabidopsis | AT1G16130 (WAKL2)wall associated kinase-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:838182] identity=42.5; qcov=0.954; evalue=0; confidence=medium |
| Rice | Os02g0111600 (OsWAK11)- identity=37.5; qcov=0.971; evalue=1.29e-141; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986455 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765851.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765851.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765851.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765851.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765851.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17713112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr5:17713477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr5:17713922 |
TCG |
T |
2bp_deletion | frameshift_variant | 59 | A1,A16,A18,A19,A2,A6,A8,B1,B10,B102,B104,B12,B120,B123,B124,B127,B130,B132,B137,B14,B15,B2,B23,B27,B28,B29,B35,B38,B41,B44,B48,B5,B66,B69,B72,B74,B83,B85,B86,B88,B93,B95,C2,C32,C33,C43,C45,C54,C55,C58,C68,C71,C72,C73,C76,C77,C8,D3,D8 |
Chr5:17713962 |
AGT |
A |
2bp_deletion | frameshift_variant | 26 | A10,A5,B101,B132,B137,B140,B35,B54,B59,B62,B70,B77,B89,B94,B98,C14,C3,C34,C35,C39,C40,C45,C47,C70,C71,C82 |
Chr5:17713982 |
AT |
A |
1bp_deletion | frameshift_variant | 24 | A10,A5,B101,B132,B137,B140,B35,B59,B62,B70,B77,B89,B94,B98,C14,C3,C34,C35,C39,C40,C45,C70,C71,C82 |
Chr5:17714004 |
G |
GT |
1bp_insertion | frameshift_variant | 26 | A10,A5,B101,B132,B137,B140,B35,B54,B59,B62,B70,B77,B89,B94,B98,C14,C3,C34,C35,C39,C40,C45,C47,C70,C71,C82 |
Chr5:17714070 |
C |
CG |
1bp_insertion | frameshift_variant | 24 | A1,A10,A20,A4,A5,B11,B112,B118,B138,B17,B23,B37,B4,B65,C14,C23,C24,C28,C31,C55,C56,C83,C84,D4 |
Chr5:17714150 |
TG |
T |
1bp_deletion | frameshift_variant | 72 | A10,A13,A2,A21,A25,A5,A6,B101,B102,B110,B112,B12,B13,B130,B132,B137,B140,B20,B21,B31,B35,B37,B4,B40,B42,B43,B45,B54,B57,B59,B60,B62,B63,B70,B71,B77,B82,B89,B93,B94,B95,B98,C1,C13,C24,C27,C3,C32,C33,C34,C35,C38,C39,C40,C45,C47,C48,C51,C52,C57,C58,C62,C68,C70,C71,C77,C78,C80,C82,C9,D11,D8 |
Chr5:17714153 |
ACC |
A |
2bp_deletion | frameshift_variant | 48 | A13,A2,A21,A25,A6,B102,B110,B112,B12,B13,B130,B20,B21,B31,B37,B4,B40,B42,B43,B45,B57,B60,B63,B71,B82,B93,B94,B95,C1,C13,C24,C27,C32,C33,C38,C48,C51,C52,C57,C58,C62,C68,C77,C78,C80,C9,D11,D8 |
Chr5:17714284 |
TA |
T |
1bp_deletion | frameshift_variant | 9 | B10,B127,B28,C2,C45,C55,C68,C72,D8 |
Chr5:17714394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr5:17714427 |
T |
TGG |
2bp_insertion | frameshift_variant | 14 | B103,B109,B33,B43,B56,B75,B76,B87,B88,C20,C29,C54,C69,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765851.1PF13947
GUB_WAK_bind 38-87 aa
PF00069
Pkinase 464-731 aa
PF07714
PK_Tyr_Ser-Thr 467-734 aa
XP_057765852.1PF13947
GUB_WAK_bind 38-87 aa
PF00069
Pkinase 464-731 aa
PF07714
PK_Tyr_Ser-Thr 467-734 aa
XP_057765853.1PF13947
GUB_WAK_bind 38-87 aa
PF00069
Pkinase 464-731 aa
PF07714
PK_Tyr_Ser-Thr 467-734 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765851.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 38 | 87 | 1.2e-08 | 35.9 | Wall-associated receptor kinase galacturonan-binding |
XP_057765851.1 |
Pfam | PF00069 |
Pkinase | Domain | 464 | 731 | 8.6e-48 | 163.7 | Protein kinase domain |
XP_057765851.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 467 | 734 | 7.6e-46 | 157.2 | Protein tyrosine and serine/threonine kinase |
XP_057765852.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 38 | 87 | 1.2e-08 | 35.9 | Wall-associated receptor kinase galacturonan-binding |
XP_057765852.1 |
Pfam | PF00069 |
Pkinase | Domain | 464 | 731 | 8.6e-48 | 163.7 | Protein kinase domain |
XP_057765852.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 467 | 734 | 7.6e-46 | 157.2 | Protein tyrosine and serine/threonine kinase |
XP_057765853.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 38 | 87 | 1.2e-08 | 35.9 | Wall-associated receptor kinase galacturonan-binding |
XP_057765853.1 |
Pfam | PF00069 |
Pkinase | Domain | 464 | 731 | 8.6e-48 | 163.7 | Protein kinase domain |
XP_057765853.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 467 | 734 | 7.6e-46 | 157.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。