当前解析结果
SmilChr05G001795| 统一新 Gene ID | SmilChr05G001795 |
|---|---|
| 名称 | SmilChr05G001795 |
| 描述 | wall-associated receptor kinase-like 1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17697166 - 17700138 / + |
| NCBI Gene ID | LOC130986456 |
|---|---|
| GeneID | 130986456 |
| locus_tag | - |
| NCBI Name | LOC130986456 |
| 原始查询 | SmilChr05G001795 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 1 |
| 产物 | wall-associated receptor kinase-like 1 |
| Arabidopsis | AT1G16130 (WAKL2)wall associated kinase-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:838182] identity=44.3; qcov=0.963; evalue=4.32e-179; confidence=medium |
| Rice | Os04g0599000 (OsWAK53)- identity=38.7; qcov=0.985; evalue=3.92e-141; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986456 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765854.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765854.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765854.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765854.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765854.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17697676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B17,B41 |
Chr5:17697727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr5:17697833 |
AAC |
A |
2bp_deletion | frameshift_variant | 113 | A1,A13,A14,A21,A23,A25,A4,A5,A6,A8,B1,B101,B102,B104,B107,B11,B110,B111,B112,B118,B12,B120,B121,B122,B127,B13,B130,B131,B133,B135,B137,B140,B16,B21,B23,B24,B27,B28,B30,B31,B34,B35,B36,B38,B40,B47,B52,B54,B57,B6,B60,B61,B62,B69,B7,B72,B73,B77,B8,B81,B84,B89,B9,B90,B91,B92,B93,B94,B95,C1,C12,C2,C20,C21,C24,C26,C28,C29,C30,C31,C33,C35,C4,C40,C43,C44,C46,C47,C48,C5,C51,C52,C56,C58,C59,C6,C60,C63,C66,C68,C70,C72,C75,C77,C80,C83,C87,D1,D3,D4,D7,D8,D9 |
Chr5:17697837 |
CCA |
C |
2bp_deletion | frameshift_variant | 53 | A11,A13,A14,A15,A19,A20,A25,A7,A8,B1,B103,B108,B111,B117,B123,B132,B134,B139,B19,B21,B22,B30,B37,B39,B41,B42,B58,B64,B79,B83,B96,B99,C15,C23,C25,C34,C35,C36,C37,C41,C43,C56,C61,C63,C65,C71,C74,C79,C82,C83,C84,C86,D5 |
Chr5:17697963 |
T |
TCG |
2bp_insertion | frameshift_variant | 198 | A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A23,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B103,B104,B105,B106,B107,B108,B11,B110,B111,B112,B115,B117,B118,B12,B120,B121,B122,B123,B124,B125,B127,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B140,B16,B21,B22,B23,B24,B26,B27,B28,B3,B30,B31,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B45,B46,B47,B48,B49,B51,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B68,B69,B7,B70,B71,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B98,B99,C1,C12,C13,C15,C17,C18,C2,C20,C21,C23,C24,C26,C28,C29,C3,C30,C31,C34,C35,C36,C37,C39,C4,C40,C41,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C56,C58,C59,C6,C60,C61,C62,C63,C65,C68,C69,C7,C70,C71,C72,C74,C75,C77,C78,C79,C80,C82,C83,C84,C86,C87,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr5:17697980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:17697981 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B37 |
Chr5:17697981 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B37 |
Chr5:17698109 |
G |
GAC |
2bp_insertion | frameshift_variant | 155 | A1,A10,A13,A14,A19,A21,A22,A25,A4,A5,A6,A7,A9,B10,B100,B105,B107,B108,B11,B110,B111,B112,B113,B115,B117,B118,B122,B124,B125,B126,B132,B133,B134,B135,B137,B138,B14,B140,B15,B17,B19,B20,B21,B22,B24,B27,B29,B3,B30,B31,B32,B34,B36,B37,B46,B48,B5,B51,B52,B53,B54,B55,B57,B59,B6,B60,B63,B64,B65,B66,B68,B69,B7,B71,B73,B75,B76,B77,B79,B8,B81,B82,B83,B84,B86,B87,B89,B90,B93,B94,B95,B96,B99,C1,C11,C13,C15,C16,C17,C19,C2,C20,C23,C24,C25,C26,C31,C34,C36,C37,C38,C39,C40,C41,C42,C43,C44,C47,C5,C52,C55,C56,C57,C58,C6,C60,C61,C63,C64,C65,C67,C68,C7,C70,C71,C72,C74,C75,C76,C78,C79,C8,C80,C82,C83,C84,C86,C87,C9,D1,D3,D6,D7,D8,D9 |
Chr5:17698112 |
GTC |
G |
2bp_deletion | frameshift_variant | 111 | A1,A10,A13,A14,A22,A4,A5,A7,A9,B10,B100,B101,B108,B11,B111,B113,B115,B117,B118,B122,B125,B126,B133,B134,B135,B138,B140,B19,B22,B24,B27,B3,B30,B31,B32,B35,B36,B46,B48,B5,B51,B52,B53,B54,B55,B59,B64,B65,B68,B7,B73,B75,B77,B79,B8,B81,B84,B87,B89,B90,B93,B96,B99,C1,C11,C15,C16,C17,C19,C2,C20,C23,C25,C26,C31,C34,C36,C37,C39,C40,C42,C43,C44,C47,C5,C55,C56,C6,C60,C61,C64,C65,C67,C7,C70,C72,C74,C75,C78,C79,C8,C82,C83,C84,C86,C87,D1,D6,D7,D8,D9 |
Chr5:17698285 |
GTC |
G |
2bp_deletion | frameshift_variant | 7 | A23,B101,B123,B52,B97,C20,C57 |
Chr5:17698288 |
C |
CAG |
2bp_insertion | frameshift_variant | 7 | A23,B101,B123,B52,B97,C20,C57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765854.1PF13947
GUB_WAK_bind 31-80 aa
PF00069
Pkinase 425-692 aa
PF07714
PK_Tyr_Ser-Thr 428-695 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765854.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 31 | 80 | 4.1e-08 | 34.2 | Wall-associated receptor kinase galacturonan-binding |
XP_057765854.1 |
Pfam | PF00069 |
Pkinase | Domain | 425 | 692 | 3e-48 | 165.2 | Protein kinase domain |
XP_057765854.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 428 | 695 | 2.5e-46 | 158.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。