Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001797

染色体: Chr05 坐标: 17715703-17719645 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001797
名称SmilChr05G001797
描述uncharacterized SmilChr05G001797
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向17715703 - 17719645 / -

ID 对照

NCBI Gene IDLOC130986469
GeneID130986469
locus_tag-
NCBI NameLOC130986469
原始查询SmilChr05G001797

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述transcription regulator [Source:NCBI gene (formerly Entrezgene);Acc:831164]; symbol=AT5G13240; hit=AT5G13240; species=arabidopsis; confidence=high
产物transcription regulator [Source:NCBI gene (formerly Entrezgene);Acc:831164]; symbol=AT5G13240; hit=AT5G13240; species=arabidopsis; confidence=high
ArabidopsisAT5G13240 (AT5G13240)
transcription regulator [Source:NCBI gene (formerly Entrezgene);Acc:831164]
identity=70.7; qcov=1; evalue=1.36e-116; confidence=high
RiceOs04g0662900
-
identity=62.3; qcov=0.991; evalue=6.43e-89; confidence=high
GOGO:0000994 (RNA polymerase III core binding); GO:0005634 (nucleus); GO:0016480 (negative regulation of transcription by RNA polymerase III)
KEGG-
PfamPF09174 (Maf1)
InterPro-
eggNOG-
NRGeneID:130986469

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057765883.1
2 Cytosol 细胞质基质 1.00000 XP_057765883.1
3 Nucleus 细胞核 0.80000 XP_057765883.1
4 Nucleoplasm 核质 0.20000 XP_057765883.1
5 Cell projection 细胞突起 0.20000 XP_057765883.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:17716392 CA C 1bp_deletion frameshift_variant 1 B49
Chr5:17716392 CA C 1bp_deletion CDS_variant 1 B49
Chr5:17718382 C T EMS_canonical_SNV CDS_variant 3 A19,B17,B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765883.1
225 aa
N
1
112
225
Maf1
C
PF09174 Maf1 26-193 aa
XP_057765884.1
225 aa
N
1
112
225
Maf1
C
PF09174 Maf1 26-193 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765883.1 Pfam PF09174 Maf1 Family 26 193 1.7e-49 169.0 Maf1 regulator
XP_057765884.1 Pfam PF09174 Maf1 Family 26 193 1.7e-49 169.0 Maf1 regulator

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909900.1
ACTTTAGCTTTGTTAAGACCTCGACTTTATTTCAGATTTAGCGCTTTCAAACATCGAAGACCTGCCAGATTTATCCACCTACCAAACCAATCTCATCCAAAACTCAACATTTTAGAGCACAATTTTTGTAATAAATTTCCATCCAATCATATCTCCATTTCCTCATATTCCAACTTCGGATTCCTCCGCCAAACAATTAGCCGTCGCCTCTGAAAATTTCGCACTAGTTTTTTCGAAAGCCGCAGTTTATATATCTTCAA...
XM_057909901.1
TGTTAAGACCTCGACTTTATTTCAGATTTAGCGCTTTCAAACATCGAAGACCTGCCAGATTTATCCACCTACCAAACCAATCTCATCCAAAACTCAACATTTTAGAGCACAATTTTTGTAATAAATTTCCATCCAATCATATCTCCATTTCCTCATATTCCAACTTCGGATTCCTCCGCCAAACAATTAGCCGTCGCCTCTGAAAATTTCGCACTAGTTTTTTCGAAAGCCGCAGTTTATATATCTTCAATTTCTGGCGT...

CDS

2 records

下载 CDS FASTA
LOC130986469
ATGAAGTACTTGGAATACACTCCTCTTGACAGAATAAATGATTTCTTGAGTCGTGTAACTCTTGGACAACGTACTATTGAAGGATGCCTGGAAGCTTACTCGTGCAAACATACCGGAACAGATAAGAAGCTCTCTCTTAGCTTGGAGAATGAGATTCTTGATCATCTTGGAAAGTCTTCGGATACTGACTCTTCTTCACCTGTGGAATATCTATTTAGTAGATCCAGTCGGAAGACATTGATTTATCTACTTCTTATTCT...
LOC130986469
ATGAAGTACTTGGAATACACTCCTCTTGACAGAATAAATGATTTCTTGAGTCGTGTAACTCTTGGACAACGTACTATTGAAGGATGCCTGGAAGCTTACTCGTGCAAACATACCGGAACAGATAAGAAGCTCTCTCTTAGCTTGGAGAATGAGATTCTTGATCATCTTGGAAAGTCTTCGGATACTGACTCTTCTTCACCTGTGGAATATCTATTTAGTAGATCCAGTCGGAAGACATTGATTTATCTACTTCTTATTCT...

Protein

2 records

下载 Protein FASTA
XP_057765883.1
MKYLEYTPLDRINDFLSRVTLGQRTIEGCLEAYSCKHTGTDKKLSLSLENEILDHLGKSSDTDSSSPVEYLFSRSSRKTLIYLLLILHHMYPDFDFSAVRVHEFFTEESWDSFKQIFDVYMLEASKEWLQENEGGSLLETLYKALDEVVKLSECEIYSYNNPDADADPLLEKGAIWSYHFFFYNRKLKRVVSFRFSCLSTLVSEGFHLDESSLEEDGEIFDGMDM
XP_057765884.1
MKYLEYTPLDRINDFLSRVTLGQRTIEGCLEAYSCKHTGTDKKLSLSLENEILDHLGKSSDTDSSSPVEYLFSRSSRKTLIYLLLILHHMYPDFDFSAVRVHEFFTEESWDSFKQIFDVYMLEASKEWLQENEGGSLLETLYKALDEVVKLSECEIYSYNNPDADADPLLEKGAIWSYHFFFYNRKLKRVVSFRFSCLSTLVSEGFHLDESSLEEDGEIFDGMDM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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