Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001800

染色体: Chr05 坐标: 17744931-17749201 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001800
名称SmilChr05G001800
描述uncharacterized SmilChr05G001800
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向17744931 - 17749201 / -

ID 对照

NCBI Gene IDLOC130986461
GeneID130986461
locus_tag-
NCBI NameLOC130986461
原始查询SmilChr05G001800

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843451]; symbol=AT1G71110; hit=AT1G71110; species=arabidopsis; confidence=high
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843451]; symbol=AT1G71110; hit=AT1G71110; species=arabidopsis; confidence=high
ArabidopsisAT1G71110 (AT1G71110)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843451]
identity=61.1; qcov=0.939; evalue=0; confidence=high
RiceOs01g0121300
-
identity=49.1; qcov=0.888; evalue=1.24e-158; confidence=high
GOGO:0016020 (membrane)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986461

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057765859.1
2 Vacuole 液泡 0.40000 XP_057765859.1
3 Vacuole membrane 液泡膜 0.40000 XP_057765859.1
4 Nucleus 细胞核 0.00000 XP_057765859.1
5 Chromosome 染色体 0.00000 XP_057765859.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:17745200 C T EMS_canonical_SNV CDS_variant 1 C44
Chr5:17745289 G A EMS_canonical_SNV CDS_variant 3 B137,B54,C40
Chr5:17745473 G A EMS_canonical_SNV CDS_variant 1 D3
Chr5:17745632 C T EMS_canonical_SNV CDS_variant 2 B42,B43
Chr5:17746328 G A EMS_canonical_SNV CDS_variant 2 B69,B9
Chr5:17746359 C T EMS_canonical_SNV CDS_variant 4 B42,B43,D3,D7
Chr5:17746577 G A EMS_canonical_SNV CDS_variant 2 B130,C33
Chr5:17746640 G A EMS_canonical_SNV CDS_variant 3 B42,D3,D7
Chr5:17747452 G A EMS_canonical_SNV CDS_variant 3 A19,B17,B41
Chr5:17748063 C T EMS_canonical_SNV CDS_variant 1 B136
Chr5:17748716 C T EMS_canonical_SNV CDS_variant 1 C16
Chr5:17748780 C CTA 2bp_insertion frameshift_variant 1 C19

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057909876.1
AGACAAGAAGCGTAAAGCAACTGGAGTGTGCAGTCATTCATATCATCCTCTTTCATTTGCATCTGCCCCCCATGTGACCCCCCACCCCCTCGTCCCGCCACCGCCTCCGACCCCCCCTCGGGGGGCTATATATACACATATATGTAGATTCATGATGCTGTCTCTGAGAGGAGATCTCTGATAATCCGGGCCTCACTAGCGACTAAGATTTTTTCACTTCCATTAATCAAGAACAGCTAAAAAAACAGAAAAAAGAAAAA...

CDS

1 records

下载 CDS FASTA
LOC130986461
ATGGGGAAGAGGGCTTCTTTGTATTTTGCTGTTTCTCTCGTTGCTGTCTCCATCTTGTTGAACTCAAGTTTTGTGCTTTGCCACCCCAGAGATCCTTTCAAGTCCATCTTAGGTGAAGAAAATATGGGGTCATGGAAGGATCAAATGTTGAGTTCTAATGGCGAAGCTCCGGGGCCTGCCAATGATGTGAGCACACTTGTATTGGCGGCGAACAGGACAAAGAGGCCTGACATTCTGTCCAAGTTCCATAAATACAGAGG...

Protein

1 records

下载 Protein FASTA
XP_057765859.1
MGKRASLYFAVSLVAVSILLNSSFVLCHPRDPFKSILGEENMGSWKDQMLSSNGEAPGPANDVSTLVLAANRTKRPDILSKFHKYRGGWDIANKHYWASVGFTGAAAFSLAILWFISFGVALLVHYSCGWKINITGNEASWSLRICLLLLILFTSAAAIGCILLSVGQVDFHGEAMRTLNYVVNQSEYTVETLRNVTEYLSLAKTVSVAQIFLPSDVESDIDRLNVDLNSAANTLELKTNENSSKIRSVFSKVKSALITI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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