Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001805`

染色体: Chr05 坐标: 17830815-17834613 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001805`
名称	SmilChr05G001805
描述	multicopper oxidase LPR2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	17830815 - 17834613 / `+`

ID 对照

NCBI Gene ID	`LOC130986478`
GeneID	`130986478`
locus_tag	`-`
NCBI Name	`LOC130986478`
原始查询	`SmilChr05G001805`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	multicopper oxidase LPR2
产物	multicopper oxidase LPR2
Arabidopsis	`AT1G71040` (LPR2) Cupredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843444] identity=68.7; qcov=0.984; evalue=0; confidence=high
Rice	`Os01g0126100` (OsLPR1) multicopper oxidase LPR1 homolog 1-like [Source:NCBI gene (formerly Entrezgene);Acc:4326010] identity=60; qcov=0.958; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3)
InterPro	-
eggNOG	-
NR	GeneID:130986478

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057765890.1`
2	Vacuole	液泡	0.40000	`XP_057765890.1`
3	Cell wall	细胞壁	0.20000	`XP_057765891.1`
4	Nucleus	细胞核	0.00000	`XP_057765890.1`
5	Chromosome	染色体	0.00000	`XP_057765890.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:17831287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:17833289`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C31
`Chr5:17833289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr5:17833340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr5:17833351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,D11
`Chr5:17833492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B69,B75,B9,C20,D10
`Chr5:17833729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr5:17833891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B73,C21,C31
`Chr5:17833953`	`C`	`CAG`	2bp_insertion	frameshift_variant	2	B104,B42
`Chr5:17833953`	`C`	`CAG`	2bp_insertion	CDS_variant	2	B104,B42
`Chr5:17833955`	`GCA`	`G`	2bp_deletion	frameshift_variant	2	B104,B42
`Chr5:17833955`	`GCA`	`G`	2bp_deletion	CDS_variant	2	B104,B42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765890.1

597 aa

298

597

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 139-215 aa PF00394 Cu-oxidase 268-348 aa PF07731 Cu-oxidase_2 414-562 aa

XP_057765891.1

574 aa

287

574

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 139-215 aa PF00394 Cu-oxidase 268-348 aa PF07731 Cu-oxidase_2 414-570 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765890.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	139	215	2.6e-09	37.9	Multicopper oxidase
`XP_057765890.1`	Pfam	`PF00394`	Cu-oxidase	Domain	268	348	7.6e-08	33.3	Multicopper oxidase
`XP_057765890.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	414	562	1.9e-05	25.2	Multicopper oxidase
`XP_057765891.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	139	215	1.6e-10	41.8	Multicopper oxidase
`XP_057765891.1`	Pfam	`PF00394`	Cu-oxidase	Domain	268	348	7e-08	33.5	Multicopper oxidase
`XP_057765891.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	414	570	3.6e-10	40.4	Multicopper oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909907.1
ATTGAAAGAAATGTAAGGGCGGAAAACTTTATAATGCTTCATATCTGTGGGTGTAAAGTAAGTAGTGTATATATAAAAGTTAAGCTTATATATAAGCGGAGACATCGAAGTCCCAGTGCAGCAGTGCCGAAAGAAAGCCTTTTTTCATATTCCTCATTTCTTTGTCACACCTCATCATTTAGTCCATTCCTTTCTTCTTCTCTACTAATCTCTCTCTCTCACACACACACACATTGCACCTCTTCTTATCTCCTTCTGTT...

XM_057909908.1
GTGTATATATAAAAGTTAAGCTTATATATAAGCGGAGACATCGAAGTCCCAGTGCAGCAGTGCCGAAAGAAAGCCTTTTTTCATATTCCTCATTTCTTTGTCACACCTCATCATTTAGTCCATTCCTTTCTTCTTCTCTACTAATCTCTCTCTCTCACACACACACACATTGCACCTCTTCTTATCTCCTTCTGTTTCATGTGAAGTGTCACCAAAACCTTTCATTAATCCTTGCTGTCCGCTCCCTCTCTCTCTCTCAC...

CDS

2 records

下载 CDS FASTA

LOC130986478
ATGGCGGTGAGAGAGAAATTGTTGCAGGCTTATGTGCTAATAAATATAATTTTGGTGAATTTTGCATGGGCTGAAGATAGACTGATAAGGCCGTCAGAGTTGGAGATGTTTGTTGATGAGCTTCCGGACATGCCCAGGATCAAAGGCTTCGATTTCGTCGATGCTTCTCTAGTTCCGACCAATCTCAATATTGGAATGTATCACAAACTATGGAAATTTCATAGAGATCTACCTGCAACACCAGTTTTTGCATATGGTAC...

Protein

2 records

下载 Protein FASTA

XP_057765890.1
MAVREKLLQAYVLINIILVNFAWAEDRLIRPSELEMFVDELPDMPRIKGFDFVDASLVPTNLNIGMYHKLWKFHRDLPATPVFAYGTTKENATVPGPTIEALHGIHTRIKWTNYLPSKHILPWDPTIPTATPHKGKGIPTVVHLHGGVDEPESDGHSGAWFTARFKDRGPSWTRKTYKYHNVQHPGTLWYHDHAMGLTRVNLLAGLVGAYIIRQPRVELPLGLPYDEEFDRPLVVFDRSFSTDGSIYMDPKGNNPSIHPQ...

XP_057765891.1
MAVREKLLQAYVLINIILVNFAWAEDRLIRPSELEMFVDELPDMPRIKGFDFVDASLVPTNLNIGMYHKLWKFHRDLPATPVFAYGTTKENATVPGPTIEALHGIHTRIKWTNYLPSKHILPWDPTIPTATPHKGKGIPTVVHLHGGVDEPESDGHSGAWFTARFKDRGPSWTRKTYKYHNVQHPGTLWYHDHAMGLTRVNLLAGLVGAYIIRQPRVELPLGLPYDEEFDRPLVVFDRSFSTDGSIYMDPKGNNPSIHPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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