当前解析结果
SmilChr05G001807| 统一新 Gene ID | SmilChr05G001807 |
|---|---|
| 名称 | SmilChr05G001807 |
| 描述 | U-box domain-containing protein 11 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17858178 - 17861196 / + |
| NCBI Gene ID | LOC130986480 |
|---|---|
| GeneID | 130986480 |
| locus_tag | - |
| NCBI Name | LOC130986480 |
| 原始查询 | SmilChr05G001807 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 11 |
| 产物 | U-box domain-containing protein 11 |
| Arabidopsis | AT1G71020 (AT1G71020)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843442] identity=60.5; qcov=0.938; evalue=0; confidence=high |
| Rice | Os02g0732200 (OsPUB9)- identity=48.5; qcov=0.954; evalue=0; confidence=high |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF04564 (U-box); PF25368 (PUB10_N); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986480 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765892.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057765892.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057765892.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765892.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765892.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17858627 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B28 |
Chr5:17858627 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B28 |
Chr5:17858684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B87,C22,D9 |
Chr5:17858743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:17858838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B5,B74 |
Chr5:17859510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:17859526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:17859528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:17859541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:17859627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B74,D10 |
Chr5:17859628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:17859643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765892.1PF25368
PUB10_N 50-169 aa
PF04564
U-box 267-338 aa
PF25598
ARM_PUB 381-641 aa
PF00514
Arm 396-435 aa
PF00514
Arm 479-517 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765892.1 |
Pfam | PF25368 |
PUB10_N | Domain | 50 | 169 | 2.3e-41 | 142.0 | PUB10-like, N-terminal domain |
XP_057765892.1 |
Pfam | PF04564 |
U-box | Domain | 267 | 338 | 7.3e-18 | 65.2 | U-box domain |
XP_057765892.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 381 | 641 | 1e-24 | 88.2 | Plant U-box protein ARM repeat region |
XP_057765892.1 |
Pfam | PF00514 |
Arm | Repeat | 396 | 435 | 2.9e-30 | 104.0 | Armadillo/beta-catenin-like repeat |
XP_057765892.1 |
Pfam | PF00514 |
Arm | Repeat | 479 | 517 | 2.9e-30 | 104.0 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。