Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001810`

染色体: Chr05 坐标: 17877643-17885686 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001810`
名称	SmilChr05G001810
描述	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	17877643 - 17885686 / `-`

ID 对照

NCBI Gene ID	`LOC130986484`
GeneID	`130986484`
locus_tag	`-`
NCBI Name	`LOC130986484`
原始查询	`SmilChr05G001810`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C
产物	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C
Arabidopsis	`AT1G71010` (FAB1C) FORMS APLOID AND BINUCLEATE CELLS 1C [Source:NCBI gene (formerly Entrezgene);Acc:843440] identity=52.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os08g0428900` (P0479C08.109) - identity=53.3; qcov=0.565; evalue=0; confidence=medium
GO	GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00118 (Cpn60_TCP1); PF01504 (PIP5K)
InterPro	-
eggNOG	-
NR	GeneID:130986484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057765894.1`
2	Nucleus	细胞核	0.00000	`XP_057765894.1`
3	Chromosome	染色体	0.00000	`XP_057765894.1`
4	Centromere	着丝粒	0.00000	`XP_057765894.1`
5	Chromatin	染色质	0.00000	`XP_057765894.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:17878400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:17878737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,B24
`Chr5:17878963`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,C79
`Chr5:17879019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:17879146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B49,C44,C74
`Chr5:17879600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:17879868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,C44,C74
`Chr5:17879888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr5:17879978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:17880318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B42,B43
`Chr5:17880555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B56,B96
`Chr5:17880782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B42,B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765894.1

1705 aa

852

1705

Cpn60_TCP1

PIP5K

PF00118 Cpn60_TCP1 373-625 aa PF01504 PIP5K 1473-1637 aa PF01504 PIP5K 1637-1693 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765894.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	373	625	3.2e-29	102.7	TCP-1/cpn60 chaperonin family
`XP_057765894.1`	Pfam	`PF01504`	PIP5K	Family	1473	1637	5.5e-45	154.5	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057765894.1`	Pfam	`PF01504`	PIP5K	Family	1637	1693	5.5e-45	154.5	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909911.1
ACCAATGGGTGAAGCGGAAGGACCACTAAGCCATGTCATCTTGCGCCAAAACCCATTAATCAAAGCAAGAATTTCAAGAAAAACTTAAGGCGCAAATTTCATTTTCGCAGCCATCAATCTCTTAGTCTAAGAAAAGATATAGTGTTGATAGCGATGCAAACAGTGCTCGCAAAAAGGAGATAGCAGATAGAGATACATGTTTATGTTCATGCACTTATACGAATAAAAAAGGTTGCTTTGTGTATGAGAGAGAAAGGGAA...

CDS

1 records

下载 CDS FASTA

LOC130986484
ATGGGAATGCATAGTAGTTCCCTGCTGCAATTTATCCAGAAGTTTCAATCTTGGATGTCTTGGGGTAACAGTGATACAAGTTCCATATTTCGTGGATTTGAGAGGATGGATAACGATTGCAGCATTTGTTCCAAGTGTGCAAGAAATGTGTTAAATTCATACCCCAAGTACCAGTGTCGAGTCTGTGGGAATCTGTTGTGTGATAACTGTAGTAAGGGCCTTGACTCTTTGGATGGAGTTGTGCCGACCAATCATTTGAA...

Protein

1 records

下载 Protein FASTA

XP_057765894.1
MGMHSSSLLQFIQKFQSWMSWGNSDTSSIFRGFERMDNDCSICSKCARNVLNSYPKYQCRVCGNLLCDNCSKGLDSLDGVVPTNHLKDTAEAVIYTMSCKICSELSPPNKSGRRCSGKVYPSESPRQSPEPPSPSFSGEGSGGHSPLALTRSSDVSLSNHPSLVSAHCSSRSYDDEGEHSISHFFSIPNEYFRDASDVDSSSVSVRHEFYSAMSLGSSPSDSPSRSHTTSSGVGCHVQLEQGGTAMSQDYHEQAVLERPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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