Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001824`

染色体: Chr05 坐标: 18245791-18248953 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001824`
名称	SmilChr05G001824
描述	uncharacterized SmilChr05G001824
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	18245791 - 18248953 / `-`

ID 对照

NCBI Gene ID	`LOC130986494`
GeneID	`130986494`
locus_tag	`-`
NCBI Name	`LOC130986494`
原始查询	`SmilChr05G001824`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	winged-helix DNA-binding transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830778]; symbol=AT5G08780; hit=AT5G08780; species=arabidopsis; confidence=weak
产物	winged-helix DNA-binding transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830778]; symbol=AT5G08780; hit=AT5G08780; species=arabidopsis; confidence=weak
Arabidopsis	`AT5G08780` (AT5G08780) winged-helix DNA-binding transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830778] identity=36.4; qcov=0.207; evalue=2.46e-16; confidence=weak
Rice	`-` -
GO	GO:0000786 (nucleosome); GO:0003690 (double-stranded DNA binding); GO:0005634 (nucleus); GO:0005730 (nucleolus); GO:0006334 (nucleosome assembly); GO:0030261 (chromosome condensation); GO:0031492 (nucleosomal DNA binding); GO:0045910 (negative regulation of DNA recombination)
KEGG	-
Pfam	PF00538 (Linker_histone)
InterPro	-
eggNOG	-
NR	GeneID:130986494

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765907.1`
2	Chromosome	染色体	0.00000	`XP_057765907.1`
3	Centromere	着丝粒	0.00000	`XP_057765907.1`
4	Chromatin	染色质	0.00000	`XP_057765907.1`
5	Telomere	端粒	0.00000	`XP_057765907.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:18246240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:18246246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:18246538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr5:18246552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,A4,B17,B41
`Chr5:18247191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:18247281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr5:18247357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:18247429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B5,B74
`Chr5:18247648`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B102,B119
`Chr5:18247648`	`TC`	`T`	1bp_deletion	CDS_variant	2	B102,B119
`Chr5:18248363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765907.1

571 aa

286

571

Linker_histone

PF00538 Linker_histone 65-125 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765907.1`	Pfam	`PF00538`	Linker_histone	Domain	65	125	2.2e-08	34.9	linker histone H1 and H5 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909924.1
ACAATATAAGTATAGTATTATCTACTATTCAAATAGTATGAAACAATATTTTTCTTCAAGTTGAAGAGTGTACAAAATGGTACACTTGGAGTCCTAACGGTAATCACGTGGTTAGTAATAAAAAAATGAAGTCCAACTTTTTCTCGTGTTGTACTTGTGCTGTACTAAATTTGTCTAAAAATAAAATAAAAATATTCTCAAAAAGTAAAGTAAAATAACAATGAGAAAAGTTAAATATAAAAGAAAGTAAAATATAAAAT...

CDS

1 records

下载 CDS FASTA

LOC130986494
ATGGAGAGGCAGCATCCACCACCGCTGCCGCATGCAAGCACCACCGCGCACGGCCGCGCACTCGAAAACCTGAAATCGCTGGTCATAAAATGCGCCATGGCCTCAGCTCCAGCTCAATCGCTCTCCGTCCAACACAATACCCTGATCGAGAAGCGTATTCAAGAATTAATTCCCACCATTCACACACCTGATCACCCCACTTATCAATGGATGATTGAGAATGCAATAAAGCAGTTGAATGAGGAAAGGGGTTGGGACGA...

Protein

1 records

下载 Protein FASTA

XP_057765907.1
MERQHPPPLPHASTTAHGRALENLKSLVIKCAMASAPAQSLSVQHNTLIEKRIQELIPTIHTPDHPTYQWMIENAIKQLNEERGWDEETISKFILKEHKDLPWAHATFLKHHLERLSKNGSITKSHDGCYFIGRESITSDRVSKPRLTITCTTPSPSSSPSASPSPSPSSSSSDTSDSSWSIELKRGRKKKRNCRKKRPTTHPRGRGRAYARGRGRGRGRSACNEDMMKDACIGQAAAGDICMDVEILSLLTEDEASDQS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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