当前解析结果
SmilChr05G001848| 统一新 Gene ID | SmilChr05G001848 |
|---|---|
| 名称 | SmilChr05G001848 |
| 描述 | DELLA protein GAI1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 18506540 - 18508674 / - |
| NCBI Gene ID | LOC130986519 |
|---|---|
| GeneID | 130986519 |
| locus_tag | - |
| NCBI Name | LOC130986519 |
| 原始查询 | SmilChr05G001848 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DELLA protein GAI1 |
| 产物 | DELLA protein GAI1 |
| Arabidopsis | AT2G01570 (RGA1)GRAS family transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:814686] identity=62.7; qcov=1.03; evalue=0; confidence=high |
| Rice | Os03g0707600 (SLR1)- identity=70.2; qcov=0.73; evalue=0; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009723 (response to ethylene); GO:0009737 (response to abscisic acid); GO:0009863 (salicylic acid mediated signaling pathway); GO:0009867 (jasmonic acid mediated signaling pathway); GO:0009938 (negative regulation of gibberellic acid mediated signaling pathway); GO:0010187 (negative regulation of seed germination); GO:0042538 (hyperosmotic salinity response); GO:0043565 (sequence-specific DNA binding); GO:2000033 (regulation of seed dormancy process); GO:2000377 (regulation of reactive oxygen species metabolic process) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03514 (GRAS); PF12041 (DELLA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986519 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765931.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057765931.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057765931.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057765931.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057765931.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:18507251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C16 |
Chr5:18507440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B58,B71,C62 |
Chr5:18507466 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C50 |
Chr5:18507466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr5:18507493 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B113,C83 |
Chr5:18507493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,C83 |
Chr5:18507501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B4,B61 |
Chr5:18507523 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B57,C82 |
Chr5:18507523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B57,C82 |
Chr5:18507535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr5:18507566 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | B32,C11,C76,C84 |
Chr5:18507566 |
GA |
G |
1bp_deletion | CDS_variant | 4 | B32,C11,C76,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765931.1PF12041
DELLA 32-99 aa
PF03514
GRAS 174-536 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765931.1 |
Pfam | PF12041 |
DELLA | Domain | 32 | 99 | 4.5e-34 | 116.9 | Transcriptional regulator DELLA protein N terminal |
XP_057765931.1 |
Pfam | PF03514 |
GRAS | Family | 174 | 536 | 4.9e-134 | 447.7 | GRAS domain family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。