当前解析结果
SmilChr05G001853| 统一新 Gene ID | SmilChr05G001853 |
|---|---|
| 名称 | SmilChr05G001853 |
| 描述 | uncharacterized SmilChr05G001853 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 18556124 - 18557642 / + |
| NCBI Gene ID | LOC131025600 |
|---|---|
| GeneID | 131025600 |
| locus_tag | - |
| NCBI Name | LOC131025600 |
| 原始查询 | SmilChr05G001853 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0438600; species=rice; confidence=low |
| 产物 | hit=Os08g0438600; species=rice; confidence=low |
| Arabidopsis | AT3G16910 (AAE7)acyl-activating enzyme 7 [Source:NCBI gene (formerly Entrezgene);Acc:820946] identity=76.4; qcov=0.376; evalue=2.77e-57; confidence=low |
| Rice | Os08g0438600- identity=77.9; qcov=0.346; evalue=1.13e-58; confidence=low |
| GO | - |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03016 (Exostosin_GT47); PF13193 (AMP-binding_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025600 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057811382.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057811382.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057811382.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811382.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811382.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:18556450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,B69,B8 |
Chr5:18556474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:18557031 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B52,C7 |
Chr5:18557031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C7 |
Chr5:18557046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B124 |
Chr5:18557056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C7 |
Chr5:18557208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:18557217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B50 |
Chr5:18557235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C54,C68 |
Chr5:18557240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B40,C39,C51 |
Chr5:18557246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A25,B50,C18,C43 |
Chr5:18557265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B124,B40,B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811382.1PF03016
Exostosin_GT47 1-67 aa
PF13193
AMP-binding_C 167-243 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811382.1 |
Pfam | PF03016 |
Exostosin_GT47 | Domain | 1 | 67 | 3.4e-25 | 89.7 | Exostosin GT47 domain |
XP_057811382.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 167 | 243 | 1.2e-20 | 74.9 | AMP-binding enzyme C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。