Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001857`

染色体: Chr05 坐标: 18595036-18599335 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001857`
名称	SmilChr05G001857
描述	probable mitochondrial adenine nucleotide transporter BTL3
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	18595036 - 18599335 / `+`

ID 对照

NCBI Gene ID	`LOC130986525`
GeneID	`130986525`
locus_tag	`-`
NCBI Name	`LOC130986525`
原始查询	`SmilChr05G001857`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable mitochondrial adenine nucleotide transporter BTL3
产物	probable mitochondrial adenine nucleotide transporter BTL3
Arabidopsis	`AT5G64970` (AT5G64970) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:836621] identity=77.4; qcov=0.737; evalue=1.89e-172; confidence=high
Rice	`Os03g0191100` - identity=65.1; qcov=0.969; evalue=6.16e-174; confidence=high
GO	GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:130986525

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765938.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057765938.1`
3	Mitochondrion	线粒体	0.20000	`XP_057765938.1`
4	Nucleus	细胞核	0.00000	`XP_057765938.1`
5	Chromosome	染色体	0.00000	`XP_057765938.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:18596128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr5:18597028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B112,B132,C61,C9
`Chr5:18597341`	`AGG`	`A`	2bp_deletion	frameshift_variant	1	C63
`Chr5:18597341`	`AGG`	`A`	2bp_deletion	CDS_variant	1	C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765938.1

456 aa

228

456

Mito_carr

PF00153 Mito_carr 118-204 aa PF00153 Mito_carr 212-298 aa PF00153 Mito_carr 325-402 aa

XP_057765939.1

414 aa

207

414

Mito_carr

PF00153 Mito_carr 118-204 aa PF00153 Mito_carr 212-298 aa PF00153 Mito_carr 325-411 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765938.1`	Pfam	`PF00153`	Mito_carr	Repeat	118	204	2.6e-58	194.5	Mitochondrial carrier protein
`XP_057765938.1`	Pfam	`PF00153`	Mito_carr	Repeat	212	298	2.6e-58	194.5	Mitochondrial carrier protein
`XP_057765938.1`	Pfam	`PF00153`	Mito_carr	Repeat	325	402	2.6e-58	194.5	Mitochondrial carrier protein
`XP_057765939.1`	Pfam	`PF00153`	Mito_carr	Repeat	118	204	1.5e-64	214.5	Mitochondrial carrier protein
`XP_057765939.1`	Pfam	`PF00153`	Mito_carr	Repeat	212	298	1.5e-64	214.5	Mitochondrial carrier protein
`XP_057765939.1`	Pfam	`PF00153`	Mito_carr	Repeat	325	411	1.5e-64	214.5	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909955.1
GTAATAACCAAGAGAGCCTCTGAAAAGTACAACATTACTTTGGAAAAATAAGTGGTTTGCAACAAGAAGAACATTGTGATTTGTGATATACTGATGCAGGCTGAGAGCTCTGCTAGCTGTTTTATACCGTTCGATGATTATTCACTAAAATTTCGATTTTCAAGCATTAACATCCCAAATGCCTGACATCATTCATCACTCCCCAAGTTTATACGAATTCAAATCACAAAATGTTTGAATCCAGTATTCGGCTGAACGAT...

XM_057909956.1
GTAATAACCAAGAGAGCCTCTGAAAAGTACAACATTACTTTGGAAAAATAAGTGGTTTGCAACAAGAAGAACATTGTGATTTGTGATATACTGATGCAGGCTGAGAGCTCTGCTAGCTGTTTTATACCGTTCGATGATTATTCACTAAAATTTCGATTTTCAAGCATTAACATCCCAAATGCCTGACATCATTCATCACTCCCCAAGTTTATACGAATTCAAATCACAAAATGTTTGAATCCAGTATTCGGCTGAACGAT...

CDS

2 records

下载 CDS FASTA

LOC130986525
ATGTTTGAATCCAGTATTCGGCTGAACGATTCTACTCAGCTCATACCCGATAACTCGAATAACTCATTTTTCTTTCCCGGTGGAATATTCCTGGATTCTAGCGCTATTCCTTCGTCAATTATCAATAAAGTTGTCGGCGAAGTTTCTTGTTACAGTCGCCCCGTGCAATCTCGGAGAAAACGGGGCGAGTTTTTGTGTTTAAGTTTGTCTGTTAAAGGGAATGATAGAGCAATTAGCAACTCGACGGAATCTGCGGGAAG...

Protein

2 records

下载 Protein FASTA

XP_057765938.1
MFESSIRLNDSTQLIPDNSNNSFFFPGGIFLDSSAIPSSIINKVVGEVSCYSRPVQSRRKRGEFLCLSLSVKGNDRAISNSTESAGSSERNEAVGSAAAAVTKPEKGVKMRLRGQGAMNTTKHLCAGAVAAMVSRTCLAPLERLKLEYIVRGEKGDLYMLIKRIATTQGLRGFWKGNFVNILRTAPFKAINFCAYDTYRKQLLKLSGNEETTNSERFIAGAAAGITATVLCLPLDTIRTRLVAPGGEVLGGVIGAFRHVV...

XP_057765939.1
MFESSIRLNDSTQLIPDNSNNSFFFPGGIFLDSSAIPSSIINKVVGEVSCYSRPVQSRRKRGEFLCLSLSVKGNDRAISNSTESAGSSERNEAVGSAAAAVTKPEKGVKMRLRGQGAMNTTKHLCAGAVAAMVSRTCLAPLERLKLEYIVRGEKGDLYMLIKRIATTQGLRGFWKGNFVNILRTAPFKAINFCAYDTYRKQLLKLSGNEETTNSERFIAGAAAGITATVLCLPLDTIRTRLVAPGGEVLGGVIGAFRHVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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