Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001864`

染色体: Chr05 坐标: 18693623-18697592 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001864`
名称	SmilChr05G001864
描述	uncharacterized SmilChr05G001864
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	18693623 - 18697592 / `+`

ID 对照

NCBI Gene ID	`LOC130986531`
GeneID	`130986531`
locus_tag	`-`
NCBI Name	`LOC130986531`
原始查询	`SmilChr05G001864`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor, putative (Protein of unknown function, DUF547) [Source:NCBI gene (formerly Entrezgene);Acc:834278]; symbol=AT5G42690; hit=AT5G42690; species=arabidopsis; confidence=high
产物	transcription factor, putative (Protein of unknown function, DUF547) [Source:NCBI gene (formerly Entrezgene);Acc:834278]; symbol=AT5G42690; hit=AT5G42690; species=arabidopsis; confidence=high
Arabidopsis	`AT5G42690` (AT5G42690) transcription factor, putative (Protein of unknown function, DUF547) [Source:NCBI gene (formerly Entrezgene);Acc:834278] identity=52.1; qcov=0.967; evalue=6.06e-164; confidence=high
Rice	`Os09g0463300` - identity=48.7; qcov=1.01; evalue=1.23e-141; confidence=high
GO	-
KEGG	-
Pfam	PF04784 (DUF547); PF14389 (Lzipper-MIP1)
InterPro	-
eggNOG	-
NR	GeneID:130986531

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057765945.1`
2	Cytoplasm	细胞质	0.40000	`XP_057765945.1`
3	Nucleus	细胞核	0.00000	`XP_057765945.1`
4	Chromosome	染色体	0.00000	`XP_057765945.1`
5	Centromere	着丝粒	0.00000	`XP_057765945.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:18695139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B11,D11
`Chr5:18695298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr5:18695299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B11,D11
`Chr5:18695609`	`GGT`	`G`	2bp_deletion	CDS_variant	2	C21,C24
`Chr5:18695729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr5:18695753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr5:18695837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C60
`Chr5:18695954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D7
`Chr5:18695968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:18696169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr5:18696700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:18696721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765945.1

553 aa

276

553

Lzipper-MIP1

DUF547

PF14389 Lzipper-MIP1 45-125 aa PF04784 DUF547 344-473 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765945.1`	Pfam	`PF14389`	Lzipper-MIP1	Family	45	125	1.3e-22	80.7	Leucine-zipper of ternary complex factor MIP1
`XP_057765945.1`	Pfam	`PF04784`	DUF547	Family	344	473	7.7e-39	133.2	Protein of unknown function, DUF547

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909962.1
AGGTAGATAATCATATCGAAATATATAAAAATTAGAAATTCGCGCACCAACGAGGCAACAATTGGAAAATATATATGCACTATCTATATTTCTGATTGCTGCATTGATAATATAGAGCTGTGCATCGTCTCTCTCTCTCTCTCTCATCTCTGACAATCAAACACACACATAAATACATACATCCGCAGACTCACAGGCTCTTGCATTCAAATATATGCGCTCTGAAATATTTATGAGTCTTAATTGATAAAGATTGTTCT...

CDS

1 records

下载 CDS FASTA

LOC130986531
ATGGAAGGCCGGAGGAGTTTGCAGTTGCAGTCTATGAAGCCTCACGTTAAGCACGAAAAGGAAAAAGTGGAACTGCAGAGTAGCTGGGTAATCGATGCTGAGAAACCATGTACGAGTAATCGAAGCTTGATAAGAGAGAGAAAATTGACATTACAACAAGATGTTGATAAGTTAAAGAAGAGACTACGGCATGAGGAAAATGTTCATAGAGCTCTGGAGAGGGCCTTCACCAGACCACTAGGAGCTCTTCCTCGTCTGCC...

Protein

1 records

下载 Protein FASTA

XP_057765945.1
MEGRRSLQLQSMKPHVKHEKEKVELQSSWVIDAEKPCTSNRSLIRERKLTLQQDVDKLKKRLRHEENVHRALERAFTRPLGALPRLPPYLPQHTLELLAEVAVLEEEVVRLEEKIVLFRKGLYQEAAYISSSKKMEIKDPEQKQSTFLVTSKADSETDIWKDSPFLSDEKRGKENQSSTSSVKNKQQSPNSKVEPLRTPVKKRATERKSGERRLDPQRSQLEMHILNHATTTKTTPANQEATSPVDGSPNKISESILKCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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