当前解析结果
SmilChr05G001865| 统一新 Gene ID | SmilChr05G001865 |
|---|---|
| 名称 | SmilChr05G001865 |
| 描述 | uncharacterized SmilChr05G001865 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 18721151 - 18722447 / - |
| NCBI Gene ID | LOC130986532 |
|---|---|
| GeneID | 130986532 |
| locus_tag | - |
| NCBI Name | LOC130986532 |
| 原始查询 | SmilChr05G001865 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AR781, pheromone receptor-like protein (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:817194]; symbol=AR781; hit=AT2G26530; species=arabidopsis; confidence=medium |
| 产物 | AR781, pheromone receptor-like protein (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:817194]; symbol=AR781; hit=AT2G26530; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G26530 (AR781)AR781, pheromone receptor-like protein (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:817194] identity=41.1; qcov=1.06; evalue=9.12e-49; confidence=medium |
| Rice | Os07g0619500 (P0560B08.115)- identity=41.5; qcov=0.377; evalue=1.05e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF05097 (DUF688); PF07816 (DUF1645) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986532 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765946.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057765946.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057765946.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765946.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765946.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:18721340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,D2 |
Chr5:18721419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr5:18721571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr5:18721643 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B112,B34,B72,C83 |
Chr5:18721655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:18721823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,C56,C59,C65 |
Chr5:18721831 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | C37 |
Chr5:18721831 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | C37 |
Chr5:18721920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr5:18721964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr5:18722144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,D7 |
Chr5:18722165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765946.1PF05097
DUF688 28-67 aa
PF07816
DUF1645 88-286 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765946.1 |
Pfam | PF05097 |
DUF688 | Family | 28 | 67 | 1.4e-05 | 25.2 | Protein of unknown function (DUF688) |
XP_057765946.1 |
Pfam | PF07816 |
DUF1645 | Family | 88 | 286 | 5.1e-38 | 132.3 | Protein of unknown function (DUF1645) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。