当前解析结果
SmilChr05G001866| 统一新 Gene ID | SmilChr05G001866 |
|---|---|
| 名称 | SmilChr05G001866 |
| 描述 | transcription factor MYB73-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 18773040 - 18774223 / + |
| NCBI Gene ID | LOC130986533 |
|---|---|
| GeneID | 130986533 |
| locus_tag | - |
| NCBI Name | LOC130986533 |
| 原始查询 | SmilChr05G001866 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB73-like |
| 产物 | transcription factor MYB73-like |
| Arabidopsis | AT4G37260 (MYB73)myb domain protein 73 [Source:NCBI gene (formerly Entrezgene);Acc:829880] identity=71.5; qcov=0.532; evalue=8.5e-57; confidence=medium |
| Rice | Os09g0106700 (R2R3-MYB)- identity=76.4; qcov=0.486; evalue=1.01e-55; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986533 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765948.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057765948.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057765948.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057765948.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057765948.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:18773473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B35 |
Chr5:18773485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:18773512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:18773638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr5:18773759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:18773762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr5:18773776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:18773788 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,B79 |
Chr5:18773836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C34 |
Chr5:18773856 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | C61 |
Chr5:18773856 |
CG |
C |
1bp_deletion | CDS_variant | 1 | C61 |
Chr5:18773876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765948.1PF00249
Myb_DNA-binding 32-78 aa
PF13921
Myb_DNA-bind_6 35-92 aa
PF00249
Myb_DNA-binding 85-128 aa
PF13921
Myb_DNA-bind_6 87-134 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765948.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 32 | 78 | 2.2e-37 | 127.6 | Myb-like DNA-binding domain |
XP_057765948.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 35 | 92 | 1.5e-26 | 93.0 | Myb-like DNA-binding domain |
XP_057765948.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 85 | 128 | 2.2e-37 | 127.6 | Myb-like DNA-binding domain |
XP_057765948.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 87 | 134 | 1.5e-26 | 93.0 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。