Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001886`

染色体: Chr05 坐标: 19167120-19174850 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001886`
名称	SmilChr05G001886
描述	BEL1-like homeodomain protein 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	19167120 - 19174850 / `-`

ID 对照

NCBI Gene ID	`LOC130986551`
GeneID	`130986551`
locus_tag	`-`
NCBI Name	`LOC130986551`
原始查询	`SmilChr05G001886`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BEL1-like homeodomain protein 4
产物	BEL1-like homeodomain protein 4
Arabidopsis	`AT2G23760` (BLH4) BEL1-like homeodomain 4 [Source:NCBI gene (formerly Entrezgene);Acc:816908] identity=52.1; qcov=0.713; evalue=2.56e-110; confidence=high
Rice	`Os03g0732100` - identity=54; qcov=0.621; evalue=1.77e-104; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX)
InterPro	-
eggNOG	-
NR	GeneID:130986551

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765974.1`
2	Chromosome	染色体	0.00000	`XP_057765974.1`
3	Centromere	着丝粒	0.00000	`XP_057765974.1`
4	Chromatin	染色质	0.00000	`XP_057765974.1`
5	Telomere	端粒	0.00000	`XP_057765974.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:19167480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr5:19172509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:19172526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr5:19172548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr5:19173875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B134,B37
`Chr5:19173877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr5:19174131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B68
`Chr5:19174150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr5:19174215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:19174223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr5:19174233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765974.1

557 aa

278

557

POX

Homeobox_KN

Homeodomain

PF07526 POX 204-329 aa PF05920 Homeobox_KN 399-438 aa PF00046 Homeodomain 406-438 aa

XP_057765975.1

557 aa

278

557

POX

Homeobox_KN

Homeodomain

PF07526 POX 204-329 aa PF05920 Homeobox_KN 399-438 aa PF00046 Homeodomain 406-438 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765974.1`	Pfam	`PF07526`	POX	Domain	204	329	1.5e-40	139.6	Associated with HOX
`XP_057765974.1`	Pfam	`PF05920`	Homeobox_KN	Family	399	438	6.6e-19	68.2	Homeobox KN domain
`XP_057765974.1`	Pfam	`PF00046`	Homeodomain	Domain	406	438	3.3e-07	30.8	Homeodomain
`XP_057765975.1`	Pfam	`PF07526`	POX	Domain	204	329	1.5e-40	139.6	Associated with HOX
`XP_057765975.1`	Pfam	`PF05920`	Homeobox_KN	Family	399	438	6.6e-19	68.2	Homeobox KN domain
`XP_057765975.1`	Pfam	`PF00046`	Homeodomain	Domain	406	438	3.3e-07	30.8	Homeodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909991.1
ATTTAATTTTTTTCCTATCTTAATTAATTATTATACATGTGCTATGCTTAACTTTCACTACCTCAACTTTCTGTTAATAAAAAAATTTCAGAAAAGGAAAAAAGAAAAAAAAAAGAAGGAAAGAGTACAAATGATAAGTTTTGTAGGGATATTAAATATATAGAAAGTTTGGTGAAAGCGAAGCGAGGTAGAAGAGTAGTGTGAGGATGAAGACGGCGACCCTTTTCCTTTCTCCTCTCCCTCCTTTCATTATCCTCTCT...

XM_057909992.1
CCTCAACTTTCTGTTAATAAAAAAATTTCAGAAAAGGAAAAAAGAAAAAAAAAAGAAGGAAAGAGTACAAATGATAAGTTTTGTAGGGATATTAAATATATAGAAAGTTTGGTGAAAGCGAAGCGAGGTAGAAGAGTAGTGTGAGGATGAAGACGGCGACCCTTTTCCTTTCTCCTCTCCCTCCTTTCATTATCCTCTCTCTCTCTCTACCTTGTCTCATCCATAACACTGTCCCTTGCTAAGATTCCATTTTCAGCACC...

CDS

2 records

下载 CDS FASTA

LOC130986551
ATGTCCCAAAGCTTCCACCAAGGCATCTACCACTTCCCAAATGCCAACGAGTGGATGATAAGAGACCAGGCCGGCGGCTTTGAGGCGCCGCCGCCGCCTCCGCCGCCGGCCTTCGACGCCGGAGGGATGCTGACGGAGATTATAAACCGGCCCTGGCGAAAACCGTGCGGCGACGATCAGATCCAGCCGACTCAGAAACAGCAGCTGTCATCTCTAGCAGTTAATGAGCTTCCAGCTTCCAGTAATCTCCAAGGGTTTCA...

Protein

2 records

下载 Protein FASTA

XP_057765974.1
MSQSFHQGIYHFPNANEWMIRDQAGGFEAPPPPPPPAFDAGGMLTEIINRPWRKPCGDDQIQPTQKQQLSSLAVNELPASSNLQGFHLIPASNMQPPSQMSWIPSNGGGGRSEEVAARGGGVLEGQGLSLSLSSLRNLEGSKFEKMNMGNNGDLYFHGQGIGSSSNSYVLEDVGTNPMLFGSPRLVSDQIHIGYVESARSSSLVRNSRYLKAAQELLLEFCCVGRGNHNHKQERNPNSASDGGGGGGLSSSKDHHLALSP...

XP_057765975.1
MSQSFHQGIYHFPNANEWMIRDQAGGFEAPPPPPPPAFDAGGMLTEIINRPWRKPCGDDQIQPTQKQQLSSLAVNELPASSNLQGFHLIPASNMQPPSQMSWIPSNGGGGRSEEVAARGGGVLEGQGLSLSLSSLRNLEGSKFEKMNMGNNGDLYFHGQGIGSSSNSYVLEDVGTNPMLFGSPRLVSDQIHIGYVESARSSSLVRNSRYLKAAQELLLEFCCVGRGNHNHKQERNPNSASDGGGGGGLSSSKDHHLALSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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