当前解析结果
SmilChr05G001890| 统一新 Gene ID | SmilChr05G001890 |
|---|---|
| 名称 | SmilChr05G001890 |
| 描述 | probable calcium-binding protein CML41 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 19210450 - 19211319 / - |
| NCBI Gene ID | LOC130986553 |
|---|---|
| GeneID | 130986553 |
| locus_tag | - |
| NCBI Name | LOC130986553 |
| 原始查询 | SmilChr05G001890 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable calcium-binding protein CML41 |
| 产物 | probable calcium-binding protein CML41 |
| Arabidopsis | AT3G50770 (CML41)calmodulin-like 41 [Source:NCBI gene (formerly Entrezgene);Acc:824241] identity=45; qcov=1.03; evalue=4.23e-47; confidence=medium |
| Rice | Os03g0769500 (OSJNBb0106M04.8)- identity=46.7; qcov=0.749; evalue=6.34e-32; confidence=medium |
| GO | GO:0005509 (calcium ion binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986553 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057765979.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057765979.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057765979.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057765979.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057765979.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:19210639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B59,C56 |
Chr5:19210762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B16,B64 |
Chr5:19210785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:19210810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:19210811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B59,C56 |
Chr5:19210942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr5:19211075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765979.1PF13833
EF-hand_8 45-70 aa
PF13499
EF-hand_7 48-110 aa
PF00036
EF-hand_1 49-75 aa
PF13405
EF-hand_6 49-78 aa
PF13202
EF-hand_5 51-72 aa
PF13499
EF-hand_7 121-183 aa
PF13833
EF-hand_8 134-182 aa
PF00036
EF-hand_1 157-183 aa
PF13202
EF-hand_5 160-180 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765979.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 45 | 70 | 6.8e-15 | 55.3 | EF-hand domain pair |
XP_057765979.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 48 | 110 | 1.9e-22 | 80.1 | EF-hand domain pair |
XP_057765979.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 49 | 75 | 2.3e-18 | 65.0 | EF hand domain |
XP_057765979.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 49 | 78 | 1.4e-18 | 65.5 | EF-hand domain |
XP_057765979.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 51 | 72 | 1.5e-09 | 37.6 | EF hand |
XP_057765979.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 121 | 183 | 1.9e-22 | 80.1 | EF-hand domain pair |
XP_057765979.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 134 | 182 | 6.8e-15 | 55.3 | EF-hand domain pair |
XP_057765979.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 157 | 183 | 2.3e-18 | 65.0 | EF hand domain |
XP_057765979.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 160 | 180 | 1.5e-09 | 37.6 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。