Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001891`

染色体: Chr05 坐标: 19219687-19224309 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001891`
名称	SmilChr05G001891
描述	probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	19219687 - 19224309 / `-`

ID 对照

NCBI Gene ID	`LOC130986554`
GeneID	`130986554`
locus_tag	`-`
NCBI Name	`LOC130986554`
原始查询	`SmilChr05G001891`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4
产物	probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4
Arabidopsis	`AT1G75020` (LPAT4) lysophosphatidyl acyltransferase 4 [Source:NCBI gene (formerly Entrezgene);Acc:843840] identity=65.4; qcov=0.976; evalue=0; confidence=high
Rice	`Os01g0782500` - identity=61; qcov=0.955; evalue=1.89e-169; confidence=high
GO	GO:0012505 (endomembrane system); GO:0016746 (acyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01553 (Acyltransferase); PF16076 (Acyltransf_C)
InterPro	-
eggNOG	-
NR	GeneID:130986554

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057765980.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057765980.1`
3	Lipid droplet	脂滴	0.20000	`XP_057765980.1`
4	Nucleus	细胞核	0.00000	`XP_057765980.1`
5	Chromosome	染色体	0.00000	`XP_057765980.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:19219776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C21,C52
`Chr5:19219817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B136,C33,D10
`Chr5:19219908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:19219987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr5:19220012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B16,B64
`Chr5:19220049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B134,B37,D11
`Chr5:19220052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:19220147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B16,B68,C14
`Chr5:19221736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr5:19221766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:19222200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:19222215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B99,C87,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765980.1

379 aa

190

379

Acyltransferase

Acyltransf_C

PF01553 Acyltransferase 87-199 aa PF16076 Acyltransf_C 255-311 aa

XP_057765981.1

379 aa

190

379

Acyltransferase

Acyltransf_C

PF01553 Acyltransferase 87-199 aa PF16076 Acyltransf_C 255-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765980.1`	Pfam	`PF01553`	Acyltransferase	Family	87	199	8.6e-18	65.1	Acyltransferase
`XP_057765980.1`	Pfam	`PF16076`	Acyltransf_C	Family	255	311	2.9e-19	69.5	Acyltransferase C-terminus
`XP_057765981.1`	Pfam	`PF01553`	Acyltransferase	Family	87	199	8.6e-18	65.1	Acyltransferase
`XP_057765981.1`	Pfam	`PF16076`	Acyltransf_C	Family	255	311	2.9e-19	69.5	Acyltransferase C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909997.1
TCTGTCTACGCATATACCAACAGCATATATTATATGCATAGACACAAATTAAGATCCTATTGTATTGCTTGGAAGGTAGAAGTGCACCGTTGTCTGCTTCGATGCATCGGAACTCAAATCTCCTCGTTTCTCAATCACTTATCAGCATGTGAGCTCCATGGACTTCAATAATGTTTTATGGCTCTGACCAACAGTCTGGTCATGAGAAACTCAAAGAGAAGAATATCTTGAATGAACAGAAGCTCTCTTGACTGGTGCCT...

XM_057909998.1
ACTAGATTATAGTATCGAGAGATGATGGATTTTCCCTCCTTCTCCGTGTTCGCATTGAGAAATTGTGATTTACTTCGCGCATTCCCCTATGATTATATATGATGTTTATTTCTGCGGAAGTCGTTGTTTTTGGTGATTCAACGAATGCGCTAGAAGGATTTGCTGCGGTGGATTTCATTTTTGTATTTATTGATCGGAAATAGTTTATGATAAATCTGGAAGTTTTTTGTAGTGGATTTTTTGATAAATCCATATACGTA...

CDS

2 records

下载 CDS FASTA

LOC130986554
ATGGAGATTAATCAGTCCCAGGAATCTACCAAAAACTTGAAGCACTTCCCACTGACTCCTTTTAGAATTTTCAGGGGTCTGCTATGTTTAGCAGTATATCTTTTGACTGCGTCTATGTTCTTAGTGTATTTTGCACCTGCAGCTACTATTGTCCTACGCCTATTCAGTGTTCGCTACAGTAGAAAAGCTGTGTCGTTCTTGTTTGGCCTATGGCTCGGTCTCTGGCCATTCTTGTTTGAGAAAATAAACAAAACCAGGGT...

Protein

2 records

下载 Protein FASTA

XP_057765980.1
MEINQSQESTKNLKHFPLTPFRIFRGLLCLAVYLLTASMFLVYFAPAATIVLRLFSVRYSRKAVSFLFGLWLGLWPFLFEKINKTRVIFSGDQVPVEERVLIISNHRTEVDWMYLWDFALRKGCLGYIKYVLKSSLMKLPIFGWGFHVLEFIPVERKWEVDEPVMHKMLSSFGNHEDPLWLAVFPEGTDYTEQKCMRSQKFAKESGLPILKNVLLPKTRGFNACLKILRGSLDAVYDVTIAYKNRCPSFMDNVFGVDPSE...

XP_057765981.1
MEINQSQESTKNLKHFPLTPFRIFRGLLCLAVYLLTASMFLVYFAPAATIVLRLFSVRYSRKAVSFLFGLWLGLWPFLFEKINKTRVIFSGDQVPVEERVLIISNHRTEVDWMYLWDFALRKGCLGYIKYVLKSSLMKLPIFGWGFHVLEFIPVERKWEVDEPVMHKMLSSFGNHEDPLWLAVFPEGTDYTEQKCMRSQKFAKESGLPILKNVLLPKTRGFNACLKILRGSLDAVYDVTIAYKNRCPSFMDNVFGVDPSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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