当前解析结果
SmilChr05G001893| 统一新 Gene ID | SmilChr05G001893 |
|---|---|
| 名称 | SmilChr05G001893 |
| 描述 | uncharacterized SmilChr05G001893 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 19248029 - 19249619 / + |
| NCBI Gene ID | LOC130986556 |
|---|---|
| GeneID | 130986556 |
| locus_tag | - |
| NCBI Name | LOC130986556 |
| 原始查询 | SmilChr05G001893 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838513]; symbol=AT1G19310; hit=AT1G19310; species=arabidopsis; confidence=high |
| 产物 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838513]; symbol=AT1G19310; hit=AT1G19310; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19310 (AT1G19310)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838513] identity=63.1; qcov=0.819; evalue=3.87e-81; confidence=high |
| Rice | Os12g0636000 (OsRDCP5)- identity=55.6; qcov=0.937; evalue=1.1e-72; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0044390 (ubiquitin-like protein conjugating enzyme binding); GO:0046872 (metal ion binding); GO:0061630 (ubiquitin protein ligase activity); GO:0071712 (GO:0071712) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986556 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057765982.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057765982.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057765982.1 |
| 4 | Endosome | 内体 | 0.20000 | XP_057765982.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765982.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:19248912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr5:19249330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B136,C33,D10 |
Chr5:19249445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765982.1PF13923
zf-C3HC4_2 32-73 aa
PF13639
zf-RING_2 32-74 aa
PF14634
zf-RING_5 32-74 aa
PF13920
zf-C3HC4_3 32-78 aa
PF13445
zf-RING_UBOX 33-71 aa
PF00097
zf-C3HC4 33-73 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765982.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 32 | 73 | 5.8e-08 | 33.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057765982.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 32 | 74 | 1.1e-07 | 32.6 | Ring finger domain |
XP_057765982.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 32 | 74 | 9.6e-07 | 29.4 | zinc-RING finger domain |
XP_057765982.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 32 | 78 | 1.1e-07 | 32.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057765982.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 33 | 71 | 6.6e-08 | 33.1 | RING-type zinc-finger |
XP_057765982.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 33 | 73 | 2.8e-08 | 34.2 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。