当前解析结果
SmilChr05G001920| 统一新 Gene ID | SmilChr05G001920 |
|---|---|
| 名称 | SmilChr05G001920 |
| 描述 | lysophospholipid acyltransferase LPEAT1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 19465429 - 19472051 / - |
| NCBI Gene ID | LOC130986580 |
|---|---|
| GeneID | 130986580 |
| locus_tag | - |
| NCBI Name | LOC130986580 |
| 原始查询 | SmilChr05G001920 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lysophospholipid acyltransferase LPEAT1-like |
| 产物 | lysophospholipid acyltransferase LPEAT1-like |
| Arabidopsis | AT1G80950 (AT1G80950)Phospholipid/glycerol acyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844435] identity=62.1; qcov=1.04; evalue=7.74e-175; confidence=high |
| Rice | Os05g0357800- identity=62.4; qcov=0.966; evalue=1.07e-160; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0006644 (phospholipid metabolic process); GO:0008374 (GO:0008374); GO:0071618 (lysophosphatidylethanolamine acyltransferase activity) |
| KEGG | smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986580 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057766010.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057766010.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766010.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766010.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766010.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:19466247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A3,B55,C45 |
Chr5:19466318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:19466741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:19466771 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B111,B33,B47,B68 |
Chr5:19466800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:19471448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B132,B66,B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766010.1PF01553
Acyltransferase 179-290 aa
XP_057766011.1PF01553
Acyltransferase 179-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766010.1 |
Pfam | PF01553 |
Acyltransferase | Family | 179 | 290 | 2.5e-17 | 63.6 | Acyltransferase |
XP_057766011.1 |
Pfam | PF01553 |
Acyltransferase | Family | 179 | 290 | 2.5e-17 | 63.7 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。