Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001942`

染色体: Chr05 坐标: 19778249-19779895 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001942`
名称	SmilChr05G001942
描述	BEL1-like homeodomain protein 11
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	19778249 - 19779895 / `-`

ID 对照

NCBI Gene ID	`LOC130986598`
GeneID	`130986598`
locus_tag	`-`
NCBI Name	`LOC130986598`
原始查询	`SmilChr05G001942`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BEL1-like homeodomain protein 11
产物	BEL1-like homeodomain protein 11
Arabidopsis	`AT1G75430` (BLH11) BEL1-like homeodomain 11 [Source:NCBI gene (formerly Entrezgene);Acc:843879] identity=49.4; qcov=0.812; evalue=3.86e-81; confidence=high
Rice	`Os03g0680800` (OsBIHD1) - identity=45; qcov=0.886; evalue=8.93e-68; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX)
InterPro	-
eggNOG	-
NR	GeneID:130986598

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766032.1`
2	Chromosome	染色体	0.00000	`XP_057766032.1`
3	Centromere	着丝粒	0.00000	`XP_057766032.1`
4	Chromatin	染色质	0.00000	`XP_057766032.1`
5	Telomere	端粒	0.00000	`XP_057766032.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:19778337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:19778699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C6,C79
`Chr5:19778766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B50,B84
`Chr5:19778950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,D10
`Chr5:19779105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B84
`Chr5:19779117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr5:19779287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr5:19779386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B21,B65,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766032.1

353 aa

176

353

POX

Homeobox_KN

Homeodomain

PF07526 POX 110-234 aa PF05920 Homeobox_KN 283-322 aa PF00046 Homeodomain 290-322 aa

XP_057766033.1

353 aa

176

353

POX

Homeobox_KN

Homeodomain

PF07526 POX 110-234 aa PF05920 Homeobox_KN 283-322 aa PF00046 Homeodomain 290-322 aa

XP_057766034.1

324 aa

162

324

POX

Homeobox_KN

Homeodomain

PF07526 POX 81-205 aa PF05920 Homeobox_KN 254-293 aa PF00046 Homeodomain 261-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766032.1`	Pfam	`PF07526`	POX	Domain	110	234	3.4e-28	99.6	Associated with HOX
`XP_057766032.1`	Pfam	`PF05920`	Homeobox_KN	Family	283	322	1.5e-18	67.1	Homeobox KN domain
`XP_057766032.1`	Pfam	`PF00046`	Homeodomain	Domain	290	322	6.5e-08	33.0	Homeodomain
`XP_057766033.1`	Pfam	`PF07526`	POX	Domain	110	234	3.4e-28	99.6	Associated with HOX
`XP_057766033.1`	Pfam	`PF05920`	Homeobox_KN	Family	283	322	1.5e-18	67.1	Homeobox KN domain
`XP_057766033.1`	Pfam	`PF00046`	Homeodomain	Domain	290	322	6.5e-08	33.0	Homeodomain
`XP_057766034.1`	Pfam	`PF07526`	POX	Domain	81	205	2.8e-28	99.8	Associated with HOX
`XP_057766034.1`	Pfam	`PF05920`	Homeobox_KN	Family	254	293	1.3e-18	67.3	Homeobox KN domain
`XP_057766034.1`	Pfam	`PF00046`	Homeodomain	Domain	261	293	4.9e-08	33.4	Homeodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910051.1
AAATTTTTCCCCTTGTCATTTTTAGCATTTTTACTTATTTTATTTCTATGCTTCTTTAAGCTCTCTCTTCTTAGCTTTTATAGCTCTCAGCTTTCTGCCATATGGTACCAATAGACTTCAGAAAAAGAACCCCTCCCCAAACAAAAACACACACCCAATGTAAATATTGTAAAAGAAAAGAATCTCTATCTCTCTTTTCTTTTCTAGATTATTACTAAGTTTTGTAGCATCCAGTCTCTCTCGGAAAGAATGTCGCGCTC...

XM_057910050.1
AATTTTTCCCCTTGTCATTTTTAGCATTTTTACTTATTTTATTTCTATGCTTCTTTAAGCTCTCTCTTCTTAGCTTTTATAGCTCTCAGCTTTCTGCCATATGGTACCAATAGACTTCAGAAAAAGAACCCCTCCCCAAACAAAAACACACACCCAATGTAAATATTGTAAAAGAAAAGAATCTCTATCTCTCTTTTCTTTTCTAGATTATTACTAAGTTTTGTAGGAGCTAGCTTTTAATTGTTTCTCAAGATTCAATG...

CDS

3 records

下载 CDS FASTA

LOC130986598
ATGGTTTCAGAAGATTCATCTTTCCCACATTTTGATGCTTATTCAAGCTCCTCACTGCCTCTCAGCATCCAGTCTCTCTCGGAAAGAATGTCGCGCTCCATCGACATCGGCCCCGATCGCCATCTCATCGATCTGCTGGGCAAGTCCAACGAAGCATCTCAGAGGCTCTCTCTCTCACTAGGCGGGGGAGAGAGAGGCCTGAACATGAACCCTGCAGCAGCCTACCTCATTGCCATGAAGGAAGGCTGTGATCAGATGGG...

Protein

3 records

下载 Protein FASTA

XP_057766032.1
MVSEDSSFPHFDAYSSSSLPLSIQSLSERMSRSIDIGPDRHLIDLLGKSNEASQRLSLSLGGGERGLNMNPAAAYLIAMKEGCDQMGFDDYDYAAMNQPYGNQSFAASMMGSSKYLQAAQSLLQEMLSVGGEGVDTSSRRYMDRLSRRRLSAKLKAELSSCELLCEKHGEYVKLVKLIGLLEEVERRYDEYWEHMEELVHSFEAIAGSGAGKSYTALALLAMSKHFCRLRNAIVAQIHVTKHKLLKDMSRLSQLSLMDHN...

XP_057766033.1
MVSEDSSFPHFDAYSSSSLPLSIQSLSERMSRSIDIGPDRHLIDLLGKSNEASQRLSLSLGGGERGLNMNPAAAYLIAMKEGCDQMGFDDYDYAAMNQPYGNQSFAASMMGSSKYLQAAQSLLQEMLSVGGEGVDTSSRRYMDRLSRRRLSAKLKAELSSCELLCEKHGEYVKLVKLIGLLEEVERRYDEYWEHMEELVHSFEAIAGSGAGKSYTALALLAMSKHFCRLRNAIVAQIHVTKHKLLKDMSRLSQLSLMDHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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