Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001944`

染色体: Chr05 坐标: 19808937-19811106 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001944`
名称	SmilChr05G001944
描述	floral homeotic protein DEFICIENS
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	19808937 - 19811106 / `-`

ID 对照

NCBI Gene ID	`LOC130986601`
GeneID	`130986601`
locus_tag	`-`
NCBI Name	`LOC130986601`
原始查询	`SmilChr05G001944`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	floral homeotic protein DEFICIENS
产物	floral homeotic protein DEFICIENS
Arabidopsis	`AT3G54340` (AP3) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:824601] identity=61; qcov=0.927; evalue=4.11e-67; confidence=high
Rice	`Os06g0712700` (SPW1) - identity=53; qcov=0.927; evalue=1.72e-55; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:130986601

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766037.1`
2	Chromosome	染色体	0.00000	`XP_057766037.1`
3	Centromere	着丝粒	0.00000	`XP_057766037.1`
4	Chromatin	染色质	0.00000	`XP_057766037.1`
5	Telomere	端粒	0.00000	`XP_057766037.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:19809176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:19809199`	`TGG`	`T`	2bp_deletion	frameshift_variant	10	A1,A2,A21,A6,B18,B53,B82,B97,C67,C78
`Chr5:19809446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C6,C79
`Chr5:19809568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:19810422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr5:19810787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B32
`Chr5:19810932`	`ATC`	`A`	2bp_deletion	frameshift_variant	56	A4,B1,B106,B107,B111,B114,B12,B121,B122,B128,B129,B13,B131,B20,B25,B30,B32,B37,B38,B39,B4,B49,B5,B60,B61,B64,B65,B68,B69,B71,B75,B77,B82,B85,B9,B91,B99,C11,C17,C32,C36,C37,C4,C40,C42,C44,C45,C49,C58,C59,C68,C69,C79,C87,D1,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766037.1

234 aa

117

234

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 81-167 aa

XP_057766039.1

177 aa

177

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 81-166 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766037.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	4.8e-24	84.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057766037.1`	Pfam	`PF01486`	K-box	Family	81	167	2.6e-15	57.1	K-box region
`XP_057766039.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.8e-24	85.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057766039.1`	Pfam	`PF01486`	K-box	Family	81	166	1.7e-15	57.7	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910056.1
TTTTCACCCATTTGGTAAATCTTTCCATTTTTGGGTAACTTAGGGTCCCTCAAACCTCTTTAATGATTCAACCCCTCTTGCTTTCTCTCCCTCTTTTATCATATTCATCTCTTGAAAATCTTATCTCCAATTTTACAAGATAGATCTGAAGAGTTTTAGAGAGAGAGAGAGAGATGGCTCGTGGGAAGATCCAGATCAAGAAAATAGAAAACCAAACAAACAGACAGGTAACCTACTCCAAGAGAAGAAATGGTTTGTTC...

XM_057910054.1
CCCATTTGGTAAATCTTTCCATTTTTGGGTAACTTAGGGTCCCTCAAACCTCTTTAATGATTCAACCCCTCTTGCTTTCTCTCCCTCTTTTATCATATTCATCTCTTGAAAATCTTATCTCCAATTTTACAAGATAGATCTGAAGAGTTTTAGAGAGAGAGAGAGAGATGGCTCGTGGGAAGATCCAGATCAAGAAAATAGAAAACCAAACAAACAGACAGGTAACCTACTCCAAGAGAAGAAATGGTTTGTTCAAGAAA...

CDS

2 records

下载 CDS FASTA

LOC130986601
ATGGCTCGTGGGAAGATCCAGATCAAGAAAATAGAAAACCAAACAAACAGACAGGTAACCTACTCCAAGAGAAGAAATGGTTTGTTCAAGAAAGCTCATGAGCTCACTGTGCTTTGTGATGCAAAGATTTCCATTCTGATGATCTCCAGCACTCAGAAGCTTCATGAATACATCAGCCCCACCATCACGACAAAGCAGATTTTTGATGAATACCAGAAGACTCTTAGGGTTGATCTTTGGAGCTCCCACTACGAGAAAAT...

Protein

2 records

下载 Protein FASTA

XP_057766037.1
MARGKIQIKKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYISPTITTKQIFDEYQKTLRVDLWSSHYEKMQEHLKKLKEINRNLWKEIRQRMGESLNDLGYEQTVHLIEDIDKSLKLIRDRKYKDLENRIDRAKKKKKNSEDIHKGLALQFDAVHHNDPHYGLVENEGDYNSMLGFRHGGPRIIALHLPPNHHHHHHHPSLHGGTGASDLTTFALLE

XP_057766039.1
MARGKIQIKKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYISPTITTKQIFDEYQKTLRVDLWSSHYEKMQEHLKKLKEINRNLWKEIRQRMGESLNDLGYEQTVHLIEDIDKSLKLIRDRKYKDLENRIDRAKKKKKNSEDIHKGLALQFFIIMIHTTV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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