Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001961`

染色体: Chr05 坐标: 20131841-20134087 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001961`
名称	SmilChr05G001961
描述	floral homeotic protein DEFICIENS-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	20131841 - 20134087 / `+`

ID 对照

NCBI Gene ID	`LOC130986615`
GeneID	`130986615`
locus_tag	`-`
NCBI Name	`LOC130986615`
原始查询	`SmilChr05G001961`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	floral homeotic protein DEFICIENS-like
产物	floral homeotic protein DEFICIENS-like
Arabidopsis	`AT3G54340` (AP3) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:824601] identity=55.2; qcov=0.87; evalue=1.23e-91; confidence=high
Rice	`Os06g0712700` (SPW1) - identity=45.9; qcov=0.794; evalue=1.29e-60; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:130986615

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766054.1`
2	Chromosome	染色体	0.00000	`XP_057766054.1`
3	Centromere	着丝粒	0.00000	`XP_057766054.1`
4	Chromatin	染色质	0.00000	`XP_057766054.1`
5	Telomere	端粒	0.00000	`XP_057766054.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:20131971`	`CA`	`C`	1bp_deletion	frameshift_variant	14	B107,B111,B41,B44,B84,C16,C30,C44,C49,C57,C59,C67,C77,D8
`Chr5:20131992`	`T`	`TGA`	2bp_insertion	frameshift_variant	63	A13,A18,A21,A23,A5,B105,B106,B107,B111,B12,B122,B128,B129,B13,B135,B16,B22,B25,B30,B31,B32,B38,B39,B4,B42,B43,B49,B5,B54,B56,B58,B61,B65,B71,B73,B77,B82,B86,B96,C11,C13,C16,C17,C31,C32,C36,C38,C40,C42,C43,C44,C45,C47,C48,C5,C55,C59,C69,C73,C77,C79,D1,D6
`Chr5:20132002`	`A`	`ATC`	2bp_insertion	frameshift_variant	3	B3,C6,C79
`Chr5:20132002`	`A`	`ATC`	2bp_insertion	CDS_variant	3	B3,C6,C79
`Chr5:20132334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,C11
`Chr5:20133751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766054.1

263 aa

132

263

SRF-TF

K-box

PF00319 SRF-TF 46-93 aa PF01486 K-box 117-176 aa

XP_057766055.1

277 aa

138

277

SRF-TF

K-box

PF00319 SRF-TF 46-93 aa PF01486 K-box 117-201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766054.1`	Pfam	`PF00319`	SRF-TF	Domain	46	93	5.7e-24	84.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057766054.1`	Pfam	`PF01486`	K-box	Family	117	176	2.1e-12	47.7	K-box region
`XP_057766055.1`	Pfam	`PF00319`	SRF-TF	Domain	46	93	6.2e-24	83.9	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057766055.1`	Pfam	`PF01486`	K-box	Family	117	201	2.7e-17	63.4	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910072.1
TCACCCATTTGGTAAATCTTTCCATTTTTGGATAGCTTAGGGTCCCTCAAACCTCTTTAATGATTCAACCCCTCTTGCTTTCTCTCTCTTTATCATATTCATCTCCTGAAAATCTTATCTCCATTTTTTACAAAGATAGATCTGAAGAGTTTGAGAGAGAGAGAGAGATGGCTCGTGGGAAGATCCAGATCAAGAAAATAGAAAACCAAACAAACAGGCAGGTAACCTACTCCAAGAGAAGAAATGGTTTGTTCAAGAAA...

XM_057910071.1
TAGGGTCCCTCAAACCTCTTTAATGATTCAACCCCTCTTGCTTTCTCTCTCTTTATCATATTCATCTCCTGAAAATCTTATCTCCATTTTTTACAAAGATAGATCTGAAGAGTTTGAGAGAGAGAGAGAGATGGCTCGTGGGAAGATCCAGATCAAGAAAATAGAAAACCAAACAAACAGGCAGGTAACCTACTCCAAGAGAAGAAATGGTTTGTTCAAGAAAGCTCATGAGCTCACAGTGCTTTGTGATGCAAAGATTT...

CDS

2 records

下载 CDS FASTA

LOC130986615
ATGATTCAACCCCTCTTGCTTTCTCTCTCTTTATCATATTCATCTCCTGAAAATCTTATCTCCATTTTTTACAAAGATAGATCTGAAGAGTTTGAGAGAGAGAGAGAGATGGCTCGTGGGAAGATCCAGATCAAGAAAATAGAAAACCAAACAAACAGGCAGGTAACCTACTCCAAGAGAAGAAATGGTTTGTTCAAGAAAGCTCATGAGCTCACAGTGCTTTGTGATGCAAAGATTTCCATTCTGATGATCTCCAGCAC...

Protein

2 records

下载 Protein FASTA

XP_057766054.1
MIQPLLLSLSLSYSSPENLISIFYKDRSEEFEREREMARGKIQIKKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYISPTITTKQIFDEYQKTVRADLWSSHYEKMQEHLKKLKEINRNLKKEIRQRMGESLNDLGYEQMVNLIENMETSLKVIREKKLRNVEVIHRGLVLQFDARHEDPHYGLVENEGDYNSMLGFQHGGPRIIAVRLQPNHHHHPHHHHHHHHHHPSLHSGTGASDLTTFA...

XP_057766055.1
MIQPLLLSLSLSYSSPENLISIFYKDRSEEFEREREMARGKIQIKKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYISPTITTKQIFDEYQKTVRADLWSSHYEKMQEHLKKLKEINRNLKKEIRQRMGESLNDLGYEQMVNLIENMETSLKVIREKKYKAITGKIDTSKKKLRNVEVIHRGLVLQFDARHEDPHYGLVENEGDYNSMLGFQHGGPRIIAVRLQPNHHHHPHHHHHHHHHHPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器