Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001975`

染色体: Chr05 坐标: 20398792-20402726 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001975`
名称	SmilChr05G001975
描述	bZIP transcription factor 29-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	20398792 - 20402726 / `+`

ID 对照

NCBI Gene ID	`LOC130986628`
GeneID	`130986628`
locus_tag	`-`
NCBI Name	`LOC130986628`
原始查询	`SmilChr05G001975`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bZIP transcription factor 29-like
产物	bZIP transcription factor 29-like
Arabidopsis	`AT4G38900` (AT4G38900) Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830045] identity=45.1; qcov=0.951; evalue=4.08e-87; confidence=high
Rice	`Os03g0127500` (OsbZIP25) - identity=43.7; qcov=0.777; evalue=1.83e-70; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2)
InterPro	-
eggNOG	-
NR	GeneID:130986628

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766069.1`
2	Chromosome	染色体	0.00000	`XP_057766069.1`
3	Centromere	着丝粒	0.00000	`XP_057766069.1`
4	Chromatin	染色质	0.00000	`XP_057766069.1`
5	Telomere	端粒	0.00000	`XP_057766069.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:20399553`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B28,C14
`Chr5:20399553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C14
`Chr5:20399780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:20399784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr5:20399788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:20399905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:20399995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,D10
`Chr5:20399999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr5:20400075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B133,C15
`Chr5:20400269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:20400299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:20400433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B15,B60,C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766069.1

448 aa

224

448

bZIP_2

bZIP_1

PF07716 bZIP_2 301-351 aa PF00170 bZIP_1 304-362 aa

XP_057766070.1

448 aa

224

448

bZIP_2

bZIP_1

PF07716 bZIP_2 301-351 aa PF00170 bZIP_1 304-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766069.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	301	351	3e-09	37.5	Basic region leucine zipper
`XP_057766069.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	304	362	8e-10	39.4	bZIP transcription factor
`XP_057766070.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	301	351	3e-09	37.5	Basic region leucine zipper
`XP_057766070.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	304	362	8e-10	39.4	bZIP transcription factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910086.1
ATTATTAAATATTAAGTGTGCTTGTCGGTATACGATTCGTTGCCTGCAACTAAGATAAGCAAGTAAAATTTAAAAATCCAATCTTTCTAATTCTGCAATAATAATCGTCATTTTTTATGCAAATCCAAAGTTTTTGTCAATTTTCACACACCTCTCGCGCTCACTCTCTAGCTAACTCCTTTTTTTTTTTTTTTAATTAATTTTTGTCTTTTTTCTAACGTAATCTCCGCCATTTTCAGCGGGATCTCTTTTCAACCCCA...

XM_057910087.1
GATTCGTTGCCTGCAACTAAGATAAGCAAGTAAAATTTAAAAATCCAATCTTTCTAATTCTGCAATAATAATCGTCATTTTTTATGCAAATCCAAAGTTTTTGTCAATTTTCACACACCTCTCGCGCTCACTCTCTAGCTAACTCCTTTTTTTTTTTTTTTAATTAATTTTTGTCTTTTTTCTAACGTAATCTCCGCCATTTTCAGCGGGATCTCTTTTCAACCCCATTTGAATAGCGGTTGTGCCGTGAATAAACATGG...

CDS

2 records

下载 CDS FASTA

LOC130986628
ATGGCTCAGACCAATCTGAAGCAATCTCCAGATCAAATTTTTGGGGCTTCTTCTCACTCGAGGTCTTTATCTCAGCCGTCATTCATGGCGAATAATTGCCTGCCCCCTTTAAGCCCTTTTCCTCCTAGTGAGTCTTCATTGGCTTCTTCAAACTCTAGTTTGAAAAACACGTCAATGGAGGAAACGGATGTCAGCTCACGAGGGCCTGCAATGGGTCTCACATCTCCTAGGGAGAATCCATTCCGTGGGAGTGGTCTTCC...

Protein

2 records

下载 Protein FASTA

XP_057766069.1
MAQTNLKQSPDQIFGASSHSRSLSQPSFMANNCLPPLSPFPPSESSLASSNSSLKNTSMEETDVSSRGPAMGLTSPRENPFRGSGLPPRRGHRRSNSDVPLGFSAMIQSSPQLVPISSQGGLGQMTNTREKSGNSISAGMNKLEVEEVNYAKSEDMGERKSEGEVVDNLFQSLMDLDHGDTLNSSGANGRDRGTLVRGTTIAGGDSNVYESESLKKNAAVAPQIRHFRSLSMDSGIGSFQFGDSPPNLQNSLCNRADQLS...

XP_057766070.1
MAQTNLKQSPDQIFGASSHSRSLSQPSFMANNCLPPLSPFPPSESSLASSNSSLKNTSMEETDVSSRGPAMGLTSPRENPFRGSGLPPRRGHRRSNSDVPLGFSAMIQSSPQLVPISSQGGLGQMTNTREKSGNSISAGMNKLEVEEVNYAKSEDMGERKSEGEVVDNLFQSLMDLDHGDTLNSSGANGRDRGTLVRGTTIAGGDSNVYESESLKKNAAVAPQIRHFRSLSMDSGIGSFQFGDSPPNLQNSLCNRADQLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器