Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002019`

染色体: Chr05 坐标: 20934004-20936623 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002019`
名称	SmilChr05G002019
描述	uncharacterized protein C594.04c-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	20934004 - 20936623 / `-`

ID 对照

NCBI Gene ID	`LOC130986660`
GeneID	`130986660`
locus_tag	`-`
NCBI Name	`LOC130986660`
原始查询	`SmilChr05G002019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:819302]; symbol=AT2G46890; hit=AT2G46890; species=arabidopsis; confidence=high
产物	3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:819302]; symbol=AT2G46890; hit=AT2G46890; species=arabidopsis; confidence=high
Arabidopsis	`AT2G46890` (AT2G46890) 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:819302] identity=58.8; qcov=0.975; evalue=1.99e-134; confidence=high
Rice	`Os04g0105300` - identity=63.9; qcov=0.648; evalue=8.53e-99; confidence=high
GO	GO:0006629 (lipid metabolic process); GO:0016020 (membrane); GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
KEGG	-
Pfam	PF02544 (Steroid_dh); PF06966 (DUF1295)
InterPro	-
eggNOG	-
NR	GeneID:130986660

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057766110.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057766110.1`
3	Nucleus	细胞核	0.00000	`XP_057766110.1`
4	Chromosome	染色体	0.00000	`XP_057766110.1`
5	Centromere	着丝粒	0.00000	`XP_057766110.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:20934316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B9
`Chr5:20934510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:20934560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr5:20934589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr5:20935938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B33,C45,C85
`Chr5:20935947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B87,C22,C5,D9
`Chr5:20936034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr5:20936301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B87,C22,C5,D9
`Chr5:20936309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:20936311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B136,C33
`Chr5:20936319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:20936327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766110.1

321 aa

160

321

DUF1295

Steroid_dh

PF06966 DUF1295 67-306 aa PF02544 Steroid_dh 192-312 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766110.1`	Pfam	`PF06966`	DUF1295	Family	67	306	2.6e-55	188.2	Protein of unknown function (DUF1295)
`XP_057766110.1`	Pfam	`PF02544`	Steroid_dh	Family	192	312	4e-06	27.6	3-oxo-5-alpha-steroid 4-dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910127.1
ATATGTAAATTTGGGGTGCACCCGAATTGTTTAGGGGCAGCACGAACTTTTGAGAAGAAGAGAATCTGAAATTAAAATATAGAAAGAATCGGCAAATAAATAAAAATAGTTGATGCAAGATCGAAACGAGCAGCTATAAAAAGTAGGTCGTTAACACAACCGGTGTGTGTCATTATCATCATCATCAACGATTCACCATCGCCATGTCTCTCACTAAAAACCTGCGGTGCGCGGCGCTCGCGTTTCTGGCACCTCTCCCT...

CDS

1 records

下载 CDS FASTA

LOC130986660
ATGTCTCTCACTAAAAACCTGCGGTGCGCGGCGCTCGCGTTTCTGGCACCTCTCCCTTCCATCCTCTTCTTCGTCTCCTTCCTCCGGCACTACGCCGCGGCGGGATCGGCGGAGTCTCTCCCCCCTCCGTGGGCGTGGTGCTATCACCACCCCATTCTGCTAGCAAATCTCCTCTTCTTCCTCAACATCAACCTTCTCTTCTGGGCTCTCGCTCTCCTCCAATCAAGCAATTGGTTGATCGACCTGTACTGGACGGTGAT...

Protein

1 records

下载 Protein FASTA

XP_057766110.1
MSLTKNLRCAALAFLAPLPSILFFVSFLRHYAAAGSAESLPPPWAWCYHHPILLANLLFFLNINLLFWALALLQSSNWLIDLYWTVIPVLMLHYYKKHPAAEWNGWRSGMAVVLTWVWFVRMTHNYLRREKWQWGEREDWRINDMRTQYGQNFWWVSFFTVYIAQQAFLMAICMPFYVIHSNQKQLSIWDAVAAAACMAGVTIAYFADTQLHNFVGRNERLKKGGEAVVPVLDEGLWRYSRHPNYFGEQLWWSGVAIFAW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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