Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002042`

染色体: Chr05 坐标: 21259016-21264744 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002042`
名称	SmilChr05G002042
描述	uncharacterized SmilChr05G002042
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	21259016 - 21264744 / `+`

ID 对照

NCBI Gene ID	`LOC130986681`
GeneID	`130986681`
locus_tag	`-`
NCBI Name	`LOC130986681`
原始查询	`SmilChr05G002042`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transmembrane/coiled-coil protein (DUF726) [Source:NCBI gene (formerly Entrezgene);Acc:829778]; symbol=AT4G36210; hit=AT4G36210; species=arabidopsis; confidence=high
产物	transmembrane/coiled-coil protein (DUF726) [Source:NCBI gene (formerly Entrezgene);Acc:829778]; symbol=AT4G36210; hit=AT4G36210; species=arabidopsis; confidence=high
Arabidopsis	`AT4G36210` (AT4G36210) transmembrane/coiled-coil protein (DUF726) [Source:NCBI gene (formerly Entrezgene);Acc:829778] identity=59.3; qcov=0.995; evalue=0; confidence=high
Rice	`Os03g0112800` (STS1) - identity=58.1; qcov=0.978; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF05277 (DUF726)
InterPro	-
eggNOG	-
NR	GeneID:130986681

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057766135.1`
2	Cytoplasm	细胞质	0.40000	`XP_057766134.1`
3	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057766134.1`
4	Lipid droplet	脂滴	0.20000	`XP_057766134.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057766135.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:21259453`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:21259730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,C34
`Chr5:21261277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr5:21262750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:21263036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:21263059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B62,B78,C23,C34
`Chr5:21263301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,C40
`Chr5:21263992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,C12
`Chr5:21264012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766134.1

676 aa

338

676

DUF726

PF05277 DUF726 315-662 aa

XP_057766135.1

556 aa

278

556

DUF726

PF05277 DUF726 315-543 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766134.1`	Pfam	`PF05277`	DUF726	Family	315	662	3.5e-100	336.0	Protein of unknown function (DUF726)
`XP_057766135.1`	Pfam	`PF05277`	DUF726	Family	315	543	2e-49	169.1	Protein of unknown function (DUF726)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910151.1
AAATTTAATAAATAGTTTATTTATTATAAAAATTCATTATCTTCAATTGAAAGCGATAAATCTGAGCTGCGGATCGCAGACAAAGTAACCGACATGTGCATAATGGGTCGTAGTCAATCGTTATACGAAGTCGTCGCTGGCGCGTTGTTATTTCCCCCAAACTGTCGAAATGAAAAGGAGAAAATCGCAAGGAAGTAGAGATCGCAAGATATTCGACGAATTGCCGGAACCAATCTTTCCTCTACAATTCAAATGCAATA...

XM_057910152.1
AAATTTAATAAATAGTTTATTTATTATAAAAATTCATTATCTTCAATTGAAAGCGATAAATCTGAGCTGCGGATCGCAGACAAAGTAACCGACATGTGCATAATGGGTCGTAGTCAATCGTTATACGAAGTCGTCGCTGGCGCGTTGTTATTTCCCCCAAACTGTCGAAATGAAAAGGAGAAAATCGCAAGGAAGTAGAGATCGCAAGATATTCGACGAATTGCCGGAACCAATCTTTCCTCTACAATTCAAATGCAATA...

CDS

2 records

下载 CDS FASTA

LOC130986681
ATGTCTTCATCACCGTCGCTGCTAACGGCGACGCAGAAATACGCCGCCGCAGCGCTGTTCGCGTTATCGCTGCACCAGGCGCAGATCCATCAGAGCCGTCCCTTGGGATTTCCCTCCCACCCAGACGACGATGGCGACGACGGAGCCTCCGCCGCCGGCTGCCCGTCCGAGGAACGCATCAGCACTAGCAGTAGTTGCGAATCCGTCGCCGATGACCCCCAGCTCTGGGCCCACGATTCATCCGGTCTTCTTCGTCCTGT...

Protein

2 records

下载 Protein FASTA

XP_057766134.1
MSSSPSLLTATQKYAAAALFALSLHQAQIHQSRPLGFPSHPDDDGDDGASAAGCPSEERISTSSSCESVADDPQLWAHDSSGLLRPVFKYLAIDSRAWDGLQETVAYASASHHVGAFIRLLSEESSDASQESAEKELALANAIKATTLSLENSHEDYESKQEKQREYEHACREKFKTSDKTTEPESEENAVLTSRLEETNATTAEEAHALSVSKSDGKPLEEITMLTYSRKVTVLYELLTACLASAPEDEKVTIRQRKGY...

XP_057766135.1
MSSSPSLLTATQKYAAAALFALSLHQAQIHQSRPLGFPSHPDDDGDDGASAAGCPSEERISTSSSCESVADDPQLWAHDSSGLLRPVFKYLAIDSRAWDGLQETVAYASASHHVGAFIRLLSEESSDASQESAEKELALANAIKATTLSLENSHEDYESKQEKQREYEHACREKFKTSDKTTEPESEENAVLTSRLEETNATTAEEAHALSVSKSDGKPLEEITMLTYSRKVTVLYELLTACLASAPEDEKVTIRQRKGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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