当前解析结果
SmilChr05G002057| 统一新 Gene ID | SmilChr05G002057 |
|---|---|
| 名称 | SmilChr05G002057 |
| 描述 | uncharacterized SmilChr05G002057 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21419188 - 21421409 / - |
| NCBI Gene ID | LOC131025645 |
|---|---|
| GeneID | 131025645 |
| locus_tag | - |
| NCBI Name | LOC131025645 |
| 原始查询 | SmilChr05G002057 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=weak |
| 产物 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=40.8; qcov=0.153; evalue=1.61e-12; confidence=weak |
| Rice | Os10g0458700- identity=31; qcov=0.202; evalue=1.29e-11; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025645 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057811428.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811428.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811428.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811428.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811428.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21419203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C15,C3,D4 |
Chr5:21419206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C15,C3,D4 |
Chr5:21419207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C15,C3,D4 |
Chr5:21419247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,A3 |
Chr5:21419275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr5:21419292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr5:21419317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,A7,C11,C15,C63 |
Chr5:21419331 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B69 |
Chr5:21419331 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B69 |
Chr5:21419424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B117,B21,B46 |
Chr5:21419501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B21,B89 |
Chr5:21419622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B21,B59,B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811428.1PF17919
RT_RNaseH_2 115-183 aa
PF17917
RT_RNaseH 117-212 aa
PF00075
RNase_H 261-336 aa
PF13456
RVT_3 264-381 aa
PF17921
Integrase_H2C2 471-527 aa
PF00665
rve 546-640 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811428.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 115 | 183 | 5.3e-13 | 49.6 | RNase H-like domain found in reverse transcriptase |
XP_057811428.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 117 | 212 | 3.8e-19 | 69.5 | RNase H-like domain found in reverse transcriptase |
XP_057811428.1 |
Pfam | PF00075 |
RNase_H | Domain | 261 | 336 | 8.6e-07 | 29.9 | RNase H |
XP_057811428.1 |
Pfam | PF13456 |
RVT_3 | Domain | 264 | 381 | 1.9e-18 | 67.3 | Reverse transcriptase-like |
XP_057811428.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 471 | 527 | 4.8e-11 | 43.3 | Integrase zinc binding domain |
XP_057811428.1 |
Pfam | PF00665 |
rve | Domain | 546 | 640 | 1.5e-16 | 61.2 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。