当前解析结果
SmilChr05G002061| 统一新 Gene ID | SmilChr05G002061 |
|---|---|
| 名称 | SmilChr05G002061 |
| 描述 | uncharacterized SmilChr05G002061 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21475153 - 21481022 / - |
| NCBI Gene ID | LOC130986693 |
|---|---|
| GeneID | 130986693 |
| locus_tag | - |
| NCBI Name | LOC130986693 |
| 原始查询 | SmilChr05G002061 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824602]; symbol=emb1967; hit=AT3G54350; species=arabidopsis; confidence=low |
| 产物 | Forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824602]; symbol=emb1967; hit=AT3G54350; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G54350 (emb1967)Forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824602] identity=34.4; qcov=0.663; evalue=6.76e-62; confidence=low |
| Rice | Os03g0800800 (OSJNBa0052F07.7)- identity=49.7; qcov=0.223; evalue=5.15e-47; confidence=weak |
| GO | GO:0002151 (G-quadruplex RNA binding); GO:0005515 (protein binding); GO:0031011 (Ino80 complex); GO:0044545 (NSL complex); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0071339 (MLL1 complex) |
| KEGG | - |
| Pfam | PF00498 (FHA); PF13325 (MCRS_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986693 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766146.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057766146.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057766146.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057766146.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057766146.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21475729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:21477316 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C75 |
Chr5:21477316 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C75 |
Chr5:21477339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:21477808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B9 |
Chr5:21477837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr5:21477878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B9 |
Chr5:21478175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,D6 |
Chr5:21478291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:21478596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:21478738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr5:21478787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766146.1PF13325
MCRS_N 10-92 aa
PF00498
FHA 700-771 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766146.1 |
Pfam | PF13325 |
MCRS_N | Family | 10 | 92 | 1.9e-16 | 61.3 | N-terminal region of micro-spherule protein |
XP_057766146.1 |
Pfam | PF00498 |
FHA | Family | 700 | 771 | 7.3e-07 | 30.2 | FHA domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。