Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002065`

染色体: Chr05 坐标: 21516468-21520192 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002065`
名称	SmilChr05G002065
描述	aldehyde dehydrogenase family 3 member F1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	21516468 - 21520192 / `+`

ID 对照

NCBI Gene ID	`LOC130986696`
GeneID	`130986696`
locus_tag	`-`
NCBI Name	`LOC130986696`
原始查询	`SmilChr05G002065`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aldehyde dehydrogenase family 3 member F1
产物	aldehyde dehydrogenase family 3 member F1
Arabidopsis	`AT4G36250` (ALDH3F1) aldehyde dehydrogenase 3F1 [Source:NCBI gene (formerly Entrezgene);Acc:829782] identity=61.3; qcov=0.969; evalue=0; confidence=high
Rice	`Os04g0540600` (OsALDH3B1) - identity=57.4; qcov=0.981; evalue=0; confidence=high
GO	GO:0004029 (aldehyde dehydrogenase (NAD+) activity); GO:0005737 (cytoplasm); GO:0006081 (aldehyde metabolic process)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00340 (Histidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00171 (Aldedh)
InterPro	-
eggNOG	-
NR	GeneID:130986696

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.60000	`XP_057766149.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057766149.1`
3	Cytosol	细胞质基质	0.20000	`XP_057766149.1`
4	Lipid droplet	脂滴	0.20000	`XP_057766149.1`
5	Nucleus	细胞核	0.00000	`XP_057766149.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:21516848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C4
`Chr5:21516943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B93,C46,C60
`Chr5:21517388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A8,B35
`Chr5:21518671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B64,B85,B91,C37
`Chr5:21518705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:21518881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B121,B136,B35,C4
`Chr5:21518893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,B62,C34
`Chr5:21519065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:21519113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr5:21519167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:21519471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr5:21519723`	`TG`	`T`	1bp_deletion	frameshift_variant	6	B28,B31,B46,C11,C42,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766149.1

485 aa

242

485

Aldedh

PF00171 Aldedh 12-434 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766149.1`	Pfam	`PF00171`	Aldedh	Family	12	434	1.3e-76	258.8	Aldehyde dehydrogenase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910166.1
GGAGCATCTTTTATCATGCTAGCTAAAATTATGAAATAAAGCTATCACCATATACTTTTCGTTCACGACTCATCTCGACTCAATTTCAAACGGAGTCGAAACGAAAAGAAAGCAAAGATTAAAGCTTTTTGCTCAAACTTGTTCGAGCAAATTGCAGAAGTTGGTTGCCGACTTCCATCAATTAAATGGGCGTCAATGGGTTTGAAATCCGTATCACGTTTAGATGAATAACTTCGAAAATAAACAAATCTGCATTTATT...

CDS

1 records

下载 CDS FASTA

LOC130986696
ATGGAAGATTTTGGAGGCTTAATCGGGCTGAGACGGGCTTTCCGTGCCGGAAAAACGAGGGGAATCGATTGGAGAACGGGCCAGCTTCGGGCCCTCTTGAAGCTCATCGCAGAAAACGAGGCCCGAATCTTCGAAGCTCTGGACCAAGATCTCGGCAAACACCCAGTTGAAGCTTATCGAGATGAGATTGGAGTGGTGAAGAAATCAGCATCCCACGCTTTGCTACACATCAAGAAATGGATGGCTCCAAAAAAGGGCCA...

Protein

1 records

下载 Protein FASTA

XP_057766149.1
MEDFGGLIGLRRAFRAGKTRGIDWRTGQLRALLKLIAENEARIFEALDQDLGKHPVEAYRDEIGVVKKSASHALLHIKKWMAPKKGQLPLLLFPSRAQVLPEPLGTVLIFGSWNFPISLTLDPLIGAISAGNTVVMKPSELAPACSSLLCETIPLYLDTEAIRVIEGGSDVAEKLLQQQWDKIFFTGSPRVGRIIMSAAAKHLTPVTLELGGKCPVILDSFSESDLKVVVKRVAGGKWGPCAGQACIGIDYLLVQQKLAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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