Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002078`

染色体: Chr05 坐标: 21717886-21718867 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002078`
名称	SmilChr05G002078
描述	uncharacterized SmilChr05G002078
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	21717886 - 21718867 / `-`

ID 对照

NCBI Gene ID	`LOC130986708`
GeneID	`130986708`
locus_tag	`-`
NCBI Name	`LOC130986708`
原始查询	`SmilChr05G002078`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843165]; symbol=AT1G68360; hit=AT1G68360; species=arabidopsis; confidence=low
产物	C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843165]; symbol=AT1G68360; hit=AT1G68360; species=arabidopsis; confidence=low
Arabidopsis	`AT1G68360` (AT1G68360) C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843165] identity=73; qcov=0.303; evalue=1.35e-24; confidence=low
Rice	`Os01g0512700` - identity=78.7; qcov=0.226; evalue=1.34e-19; confidence=weak
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0009736 (cytokinin-activated signaling pathway); GO:0009740 (gibberellic acid mediated signaling pathway); GO:0010026 (trichome differentiation); GO:0010090 (trichome morphogenesis)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130986708

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766169.1`
2	Nucleoplasm	核质	0.60000	`XP_057766169.1`
3	Cytoplasm	细胞质	0.20000	`XP_057766169.1`
4	Chromosome	染色体	0.00000	`XP_057766169.1`
5	Centromere	着丝粒	0.00000	`XP_057766169.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:21718222`	`T`	`TA`	1bp_insertion	frameshift_variant	13	A9,B134,B3,B64,B73,B87,B88,C2,C22,C32,C69,C80,C9
`Chr5:21718260`	`C`	`CT`	1bp_insertion	frameshift_variant	13	A6,B10,B128,B129,B35,B4,B68,B78,B81,B95,C3,C57,C61
`Chr5:21718292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,C26,C79
`Chr5:21718304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B78,C8,D7
`Chr5:21718313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr5:21718336`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,C27,C79,D4
`Chr5:21718341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B3,B75,D3
`Chr5:21718342`	`G`	`GAT`	2bp_insertion	frameshift_variant	11	A21,B13,B140,B3,B52,B75,C2,C48,C5,C62,D3
`Chr5:21718349`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr5:21718350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr5:21718357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:21718384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B17

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910186.1
AGAAATTCATAATTTAGAGAAAGAGATGAATGACAAAGTGTATCCATCAGCGAAGCCCACTGCCAACGGCGGCGGCGGCGCTCCCACCGCGGCGAACCCGGCGTTCCCGACGAACAAAGCGCAGTTCTACAACTCCCCTCGGCCGACCACCGCCGCGGCTGCTGCTGCTCGTGCTGCCTCTGGTCGACTCTCGCGGCGGCTGCTGCTGCCGCGAGTTCGCCAACTCGCAGGCCCTCGGCGATCACCAGAACGCGCACAAG...

CDS

1 records

下载 CDS FASTA

LOC130986708
ATGAATGACAAAGTGTATCCATCAGCGAAGCCCACTGCCAACGGCGGCGGCGGCGCTCCCACCGCGGCGAACCCGGCGTTCCCGACGAACAAAGCGCAGTTCTACAACTCCCCTCGGCCGACCACCGCCGCGGCTGCTGCTGCTCGTGCTGCCTCTGGTCGACTCTCGCGGCGGCTGCTGCTGCCGCGAGTTCGCCAACTCGCAGGCCCTCGGCGATCACCAGAACGCGCACAAGAAGGAGCGGCAGCAGCTCAAGCGCG...

Protein

1 records

下载 Protein FASTA

XP_057766169.1
MNDKVYPSAKPTANGGGGAPTAANPAFPTNKAQFYNSPRPTTAAAAAARAASGRLSRRLLLPRVRQLAGPRRSPERAQEGAAAAQARPAAGQPRRRRLLHAQPHGLPSLGRSSSTLKDSEFPASDGRKYECQYCCREFANSQALGDHQNAHKKERQQLKRAQLQASRDAAASYMRNPMVSPLTADSLHAIHNLKARQQYKRNFKGVLP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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