当前解析结果
SmilChr05G002080| 统一新 Gene ID | SmilChr05G002080 |
|---|---|
| 名称 | SmilChr05G002080 |
| 描述 | uncharacterized SmilChr05G002080 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21740968 - 21743967 / + |
| NCBI Gene ID | LOC130986710 |
|---|---|
| GeneID | 130986710 |
| locus_tag | - |
| NCBI Name | LOC130986710 |
| 原始查询 | SmilChr05G002080 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphatidylinositolglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829705]; symbol=AT4G35530; hit=AT4G35530; species=arabidopsis; confidence=high |
| 产物 | phosphatidylinositolglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829705]; symbol=AT4G35530; hit=AT4G35530; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G35530 (AT4G35530)phosphatidylinositolglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829705] identity=53.5; qcov=0.93; evalue=2.43e-58; confidence=high |
| Rice | Os05g0165400- identity=45.9; qcov=0.91; evalue=1.26e-41; confidence=medium |
| GO | GO:0000506 (glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex); GO:0006506 (GPI anchor biosynthetic process) |
| KEGG | smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF10181 (PIG-H) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986710 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057766171.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057766171.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057766171.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057766171.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057766171.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21741174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B45,B79,C76,C82 |
Chr5:21741310 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B1,B102,B68 |
Chr5:21741316 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr5:21741316 |
CT |
C |
1bp_deletion | CDS_variant | 1 | D4 |
Chr5:21741319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr5:21741862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B80,B99,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766171.1PF10181
PIG-H 102-165 aa
XP_057766172.1PF10181
PIG-H 102-165 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766171.1 |
Pfam | PF10181 |
PIG-H | Family | 102 | 165 | 2.2e-18 | 66.5 | GPI-GlcNAc transferase complex, PIG-H component |
XP_057766172.1 |
Pfam | PF10181 |
PIG-H | Family | 102 | 165 | 2.2e-18 | 66.5 | GPI-GlcNAc transferase complex, PIG-H component |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。