Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002080

染色体: Chr05 坐标: 21740968-21743967 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002080
名称SmilChr05G002080
描述uncharacterized SmilChr05G002080
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向21740968 - 21743967 / +

ID 对照

NCBI Gene IDLOC130986710
GeneID130986710
locus_tag-
NCBI NameLOC130986710
原始查询SmilChr05G002080

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述phosphatidylinositolglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829705]; symbol=AT4G35530; hit=AT4G35530; species=arabidopsis; confidence=high
产物phosphatidylinositolglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829705]; symbol=AT4G35530; hit=AT4G35530; species=arabidopsis; confidence=high
ArabidopsisAT4G35530 (AT4G35530)
phosphatidylinositolglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829705]
identity=53.5; qcov=0.93; evalue=2.43e-58; confidence=high
RiceOs05g0165400
-
identity=45.9; qcov=0.91; evalue=1.26e-41; confidence=medium
GOGO:0000506 (glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex); GO:0006506 (GPI anchor biosynthetic process)
KEGGsmil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF10181 (PIG-H)
InterPro-
eggNOG-
NRGeneID:130986710

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057766171.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057766171.1
3 Nucleus membrane 核膜 0.20000 XP_057766171.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057766171.1
5 Nucleus 细胞核 0.00000 XP_057766171.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:21741174 G A EMS_canonical_SNV CDS_variant 5 B138,B45,B79,C76,C82
Chr5:21741310 C T EMS_canonical_SNV CDS_variant 4 A4,B1,B102,B68
Chr5:21741316 CT C 1bp_deletion frameshift_variant 1 D4
Chr5:21741316 CT C 1bp_deletion CDS_variant 1 D4
Chr5:21741319 G A EMS_canonical_SNV CDS_variant 1 D4
Chr5:21741862 C T EMS_canonical_SNV CDS_variant 3 B80,B99,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057766171.1
199 aa
N
1
100
199
PIG-H
C
PF10181 PIG-H 102-165 aa
XP_057766172.1
199 aa
N
1
100
199
PIG-H
C
PF10181 PIG-H 102-165 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057766171.1 Pfam PF10181 PIG-H Family 102 165 2.2e-18 66.5 GPI-GlcNAc transferase complex, PIG-H component
XP_057766172.1 Pfam PF10181 PIG-H Family 102 165 2.2e-18 66.5 GPI-GlcNAc transferase complex, PIG-H component

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057910188.1
TCCCATTTGCTCAATTTCGCTATGTGTTAACCGAACTCGAATGGCTAGACTAGACACACTCAATATATACAAACTACAGCACAAATTAGTGCTACAGCTGCAGAACGACGACGACTCCACCGATCAGTCTCTACAATTTGGCCCTAGATTTGTTCCCGAATATATTTCGGTTTCGGCGTTGAGCTGAATCGGAGATGGAGGAATCGGTTACTATAAAAGGTCGATACAAATACGTACACGATGTGAAGATTGGCTCGCCC...
XM_057910189.1
TCCCATTTGCTCAATTTCGCTATGTGTTAACCGAACTCGAATGGCTAGACTAGACACACTCAATATATACAAACTACAGCACAAATTAGTGCTACAGCTGCAGAACGACGACGACTCCACCGATCAGTCTCTACAATTTGGCCCTAGATTTGTTCCCGAATATATTTCGGTTTCGGCGTTGAGCTGAATCGGAGATGGAGGAATCGGTTACTATAAAAGGTCGATACAAATACGTACACGATGTGAAGATTGGCTCGCCC...

CDS

2 records

下载 CDS FASTA
LOC130986710
ATGGAGGAATCGGTTACTATAAAAGGTCGATACAAATACGTACACGATGTGAAGATTGGCTCGCCCGAAGCAATTGACGTTCACCACATCTTCATCGCGAGAAGCGGCGCAGATTTTCTCCCTCTCTGTTCGTATGCTCTTTGGTTTGCGGCTGCTTGCTTTCTGATTTTCACGTTATTGCAGAAAACGACGACTGTCTACGATCTATTGATGCTGGACAAGCCTTTTGCTATCATCATTTCGAGTTTTGTTGTAGCTGG...
LOC130986710
ATGGAGGAATCGGTTACTATAAAAGGTCGATACAAATACGTACACGATGTGAAGATTGGCTCGCCCGAAGCAATTGACGTTCACCACATCTTCATCGCGAGAAGCGGCGCAGATTTTCTCCCTCTCTGTTCGTATGCTCTTTGGTTTGCGGCTGCTTGCTTTCTGATTTTCACGTTATTGCAGAAAACGACGACTGTCTACGATCTATTGATGCTGGACAAGCCTTTTGCTATCATCATTTCGAGTTTTGTTGTAGCTGG...

Protein

2 records

下载 Protein FASTA
XP_057766171.1
MEESVTIKGRYKYVHDVKIGSPEAIDVHHIFIARSGADFLPLCSYALWFAAACFLIFTLLQKTTTVYDLLMLDKPFAIIISSFVVAGFLIRQIVRKQVEKESVIILPAFGIQLETVYRSGKTVHQFVPIDKILKPVLNECVTPVTCYWSLSLIIRGENELLLVFKGLYPPVTMLVPIWKALCAAIDDKEWADTPSYCDT
XP_057766172.1
MEESVTIKGRYKYVHDVKIGSPEAIDVHHIFIARSGADFLPLCSYALWFAAACFLIFTLLQKTTTVYDLLMLDKPFAIIISSFVVAGFLIRQIVRKQVEKESVIILPAFGIQLETVYRSGKTVHQFVPIDKILKPVLNECVTPVTCYWSLSLIIRGENELLLVFKGLYPPVTMLVPIWKALCAAIDDKEWADTPSYCDT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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