Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002088

染色体: Chr05 坐标: 21869726-21874783 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002088
名称SmilChr05G002088
描述folate transporter 1, chloroplastic
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向21869726 - 21874783 / -

ID 对照

NCBI Gene IDLOC130986717
GeneID130986717
locus_tag-
NCBI NameLOC130986717
原始查询SmilChr05G002088

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述folate transporter 1, chloroplastic
产物folate transporter 1%2C chloroplastic
ArabidopsisAT5G66380 (FOLT1)
folate transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:836770]
identity=71; qcov=0.987; evalue=6.17e-160; confidence=high
RiceOs03g0734700 (OSJNBa0027J18.11)
-
identity=67.8; qcov=1; evalue=2.22e-138; confidence=high
GOGO:0006862 (nucleotide transport); GO:0008517 (folic acid transmembrane transporter activity); GO:0015230 (FAD transmembrane transporter activity); GO:1904947 (folate import into mitochondrion)
KEGG-
PfamPF00153 (Mito_carr)
InterPro-
eggNOG-
NRGeneID:130986717

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057766187.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057766187.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057766187.1
4 Nucleus 细胞核 0.00000 XP_057766187.1
5 Chromosome 染色体 0.00000 XP_057766187.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:21870336 C T EMS_canonical_SNV CDS_variant 1 A5
Chr5:21870649 C T EMS_canonical_SNV CDS_variant 3 B55,B90,B92
Chr5:21873233 C T EMS_canonical_SNV CDS_variant 4 B7,B71,B94,C60
Chr5:21874474 C T EMS_canonical_SNV CDS_variant 1 B53
Chr5:21874656 C T EMS_canonical_SNV CDS_variant 3 B87,C22,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057766187.1
308 aa
N
1
154
308
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 7-97 aa PF00153 Mito_carr 102-192 aa PF00153 Mito_carr 212-300 aa
XP_057766188.1
307 aa
N
1
154
307
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 7-97 aa PF00153 Mito_carr 102-191 aa PF00153 Mito_carr 211-299 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057766187.1 Pfam PF00153 Mito_carr Repeat 7 97 3.2e-69 229.4 Mitochondrial carrier protein
XP_057766187.1 Pfam PF00153 Mito_carr Repeat 102 192 3.2e-69 229.4 Mitochondrial carrier protein
XP_057766187.1 Pfam PF00153 Mito_carr Repeat 212 300 3.2e-69 229.4 Mitochondrial carrier protein
XP_057766188.1 Pfam PF00153 Mito_carr Repeat 7 97 1.7e-67 223.9 Mitochondrial carrier protein
XP_057766188.1 Pfam PF00153 Mito_carr Repeat 102 191 1.7e-67 223.9 Mitochondrial carrier protein
XP_057766188.1 Pfam PF00153 Mito_carr Repeat 211 299 1.7e-67 223.9 Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057910205.1
TTAGTTTTATTAGTAAGAGAGTGGCGTGGCGGCTGTTTTTGTATAACTGAGAAAGTGTGATGAAAGCGAAGCTGAAACTATAAAGCAGCTGAGATTCATGGCGGCGGACTGGCAGTGGGAGAACGCGGCCGCCGGATCCGCCGCCGGCCTCGCCACTGTCAGCTTTACTCACCCTCTCGACGTCGTCCGCACTCGATTTCAAGTGAACGACGGTCGGTTACTGCACCTACCTACCTATAAGAACACTCCTCAAGCTCTAT...
XM_057910204.1
TTAGTTTTATTAGTAAGAGAGTGGCGTGGCGGCTGTTTTTGTATAACTGAGAAAGTGTGATGAAAGCGAAGCTGAAACTATAAAGCAGCTGAGATTCATGGCGGCGGACTGGCAGTGGGAGAACGCGGCCGCCGGATCCGCCGCCGGCCTCGCCACTGTCAGCTTTACTCACCCTCTCGACGTCGTCCGCACTCGATTTCAAGTGAACGACGGTCGGTTACTGCACCTACCTACCTATAAGAACACTCCTCAAGCTCTAT...

CDS

2 records

下载 CDS FASTA
LOC130986717
ATGGCGGCGGACTGGCAGTGGGAGAACGCGGCCGCCGGATCCGCCGCCGGCCTCGCCACTGTCAGCTTTACTCACCCTCTCGACGTCGTCCGCACTCGATTTCAAGTGAACGACGGTCGGTTACTGCACCTACCTACCTATAAGAACACTCCTCAAGCTCTATTAACCATTGCTCGCACTGAGGGTCTCAGAGGGCTGTATGCTGGCTTTTATCCTGCCGTTCTTGGATCAACAATTTCTTGGGGTTTATATTTCTTCTT...
LOC130986717
ATGGCGGCGGACTGGCAGTGGGAGAACGCGGCCGCCGGATCCGCCGCCGGCCTCGCCACTGTCAGCTTTACTCACCCTCTCGACGTCGTCCGCACTCGATTTCAAGTGAACGACGGTCGGTTACTGCACCTACCTACCTATAAGAACACTCCTCAAGCTCTATTAACCATTGCTCGCACTGAGGGTCTCAGAGGGCTGTATGCTGGCTTTTATCCTGCCGTTCTTGGATCAACAATTTCTTGGGGTTTATATTTCTTCTT...

Protein

2 records

下载 Protein FASTA
XP_057766187.1
MAADWQWENAAAGSAAGLATVSFTHPLDVVRTRFQVNDGRLLHLPTYKNTPQALLTIARTEGLRGLYAGFYPAVLGSTISWGLYFFFYSKAKQRYLRSREELTPGLHLASAAEAGALVSCCTNPIWLVKTRLQLQTPQQARPYSGFHDALRTILREEGWKALYKGLIPGLFLQITHGAIQFTAYEELRKMVISFRTTESEQSLNAAVNSLDSIDYAILGASSKLAAISLTYPFQVIRARLQQRPTIKGIPRYIDSLHVVK...
XP_057766188.1
MAADWQWENAAAGSAAGLATVSFTHPLDVVRTRFQVNDGRLLHLPTYKNTPQALLTIARTEGLRGLYAGFYPAVLGSTISWGLYFFFYSKAKQRYLRSREELTPGLHLASAAEAGALVSCCTNPIWLVKTRLQLQTPQQARPYSGFHDALRTILREEGWKALYKGLIPGLFLITHGAIQFTAYEELRKMVISFRTTESEQSLNAAVNSLDSIDYAILGASSKLAAISLTYPFQVIRARLQQRPTIKGIPRYIDSLHVVKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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