当前解析结果
SmilChr05G002088| 统一新 Gene ID | SmilChr05G002088 |
|---|---|
| 名称 | SmilChr05G002088 |
| 描述 | folate transporter 1, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21869726 - 21874783 / - |
| NCBI Gene ID | LOC130986717 |
|---|---|
| GeneID | 130986717 |
| locus_tag | - |
| NCBI Name | LOC130986717 |
| 原始查询 | SmilChr05G002088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | folate transporter 1, chloroplastic |
| 产物 | folate transporter 1%2C chloroplastic |
| Arabidopsis | AT5G66380 (FOLT1)folate transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:836770] identity=71; qcov=0.987; evalue=6.17e-160; confidence=high |
| Rice | Os03g0734700 (OSJNBa0027J18.11)- identity=67.8; qcov=1; evalue=2.22e-138; confidence=high |
| GO | GO:0006862 (nucleotide transport); GO:0008517 (folic acid transmembrane transporter activity); GO:0015230 (FAD transmembrane transporter activity); GO:1904947 (folate import into mitochondrion) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986717 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057766187.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057766187.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057766187.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766187.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766187.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21870336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr5:21870649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,B90,B92 |
Chr5:21873233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B7,B71,B94,C60 |
Chr5:21874474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr5:21874656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B87,C22,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766187.1PF00153
Mito_carr 7-97 aa
PF00153
Mito_carr 102-192 aa
PF00153
Mito_carr 212-300 aa
XP_057766188.1PF00153
Mito_carr 7-97 aa
PF00153
Mito_carr 102-191 aa
PF00153
Mito_carr 211-299 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766187.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 7 | 97 | 3.2e-69 | 229.4 | Mitochondrial carrier protein |
XP_057766187.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 102 | 192 | 3.2e-69 | 229.4 | Mitochondrial carrier protein |
XP_057766187.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 212 | 300 | 3.2e-69 | 229.4 | Mitochondrial carrier protein |
XP_057766188.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 7 | 97 | 1.7e-67 | 223.9 | Mitochondrial carrier protein |
XP_057766188.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 102 | 191 | 1.7e-67 | 223.9 | Mitochondrial carrier protein |
XP_057766188.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 211 | 299 | 1.7e-67 | 223.9 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。