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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002098

染色体: Chr05 坐标: 21955121-21958091 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002098
名称SmilChr05G002098
描述pentatricopeptide repeat-containing protein At4g14050, mitochondrial
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向21955121 - 21958091 / +

ID 对照

NCBI Gene IDLOC130986726
GeneID130986726
locus_tag-
NCBI NameLOC130986726
原始查询SmilChr05G002098

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g14050, mitochondrial
产物pentatricopeptide repeat-containing protein At4g14050%2C mitochondrial
ArabidopsisAT4G14050 (AT4G14050)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827041]
identity=58.2; qcov=0.993; evalue=0; confidence=high
RiceOs11g0661000
-
identity=51.6; qcov=0.971; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF17177 (PPR_long); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:130986726

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057766203.1
2 Nucleus 细胞核 0.00000 XP_057766203.1
3 Chromosome 染色体 0.00000 XP_057766203.1
4 Centromere 着丝粒 0.00000 XP_057766203.1
5 Chromatin 染色质 0.00000 XP_057766203.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:21955282 T TG 1bp_insertion frameshift_variant 30 B107,B108,B115,B119,B122,B125,B126,B140,B20,B37,B54,B6,B62,B65,B7,B79,B87,B90,B96,B98,C24,C25,C36,C41,C46,C49,C61,C70,C87,D3
Chr5:21955330 GT G 1bp_deletion frameshift_variant 17 B103,B107,B138,B16,B26,B34,B90,B92,C1,C16,C50,C54,C73,C79,C84,C85,D6
Chr5:21955358 G A EMS_canonical_SNV CDS_variant 2 C62,D3
Chr5:21955374 C T EMS_canonical_SNV CDS_variant 2 B27,D10
Chr5:21955432 G A EMS_canonical_SNV CDS_variant 2 B42,B43
Chr5:21955440 GC G 1bp_deletion frameshift_variant 29 A24,A5,B101,B135,B136,B33,B37,B45,B56,B67,B68,B74,B82,B88,B89,B93,B96,C10,C28,C33,C40,C42,C60,C64,C66,C7,C8,C80,D6
Chr5:21955460 C T EMS_canonical_SNV CDS_variant 5 A10,B117,B132,B35,B7
Chr5:21955503 C T EMS_canonical_SNV CDS_variant 3 B22,B27,D10
Chr5:21955510 ACC A 2bp_deletion frameshift_variant 235 A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,A8,A9,B1,B100,B101,B102,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B114,B115,B117,B118,B119,B12,B120,B122,B123,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B14,B140,B15,B16,B17,B18,B19,B2,B20,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B43,B44,B46,B47,B48,B49,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B8,B80,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C30,C31,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D5,D6,D7,D8,D9
Chr5:21955542 G A EMS_canonical_SNV CDS_variant 1 B115
Chr5:21955552 C T EMS_canonical_SNV CDS_variant 1 C38
Chr5:21955929 G A EMS_canonical_SNV CDS_variant 1 B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766203.1
611 aa
N
1
306
611
PPR
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 43-68 aa PF01535 PPR 145-172 aa PF01535 PPR 173-201 aa PF01535 PPR 204-234 aa PF01535 PPR 278-305 aa PF13812 PPR_3 303-350 aa PF13041 PPR_2 303-351 aa PF01535 PPR 306-335 aa PF17177 PPR_long 321-419 aa PF01535 PPR 341-369 aa PF01535 PPR 378-402 aa PF20431 E_motif 423-482 aa PF14432 DYW_deaminase 519-611 aa
XP_057766204.1
611 aa
N
1
306
611
PPR
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 43-68 aa PF01535 PPR 145-172 aa PF01535 PPR 173-201 aa PF01535 PPR 204-234 aa PF01535 PPR 278-305 aa PF13812 PPR_3 303-350 aa PF13041 PPR_2 303-351 aa PF01535 PPR 306-335 aa PF17177 PPR_long 321-419 aa PF01535 PPR 341-369 aa PF01535 PPR 378-402 aa PF20431 E_motif 423-482 aa PF14432 DYW_deaminase 519-611 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057766203.1 Pfam PF01535 PPR Repeat 43 68 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF01535 PPR Repeat 145 172 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF01535 PPR Repeat 173 201 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF01535 PPR Repeat 204 234 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF01535 PPR Repeat 278 305 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF13812 PPR_3 Repeat 303 350 5.3e-14 52.8 Pentatricopeptide repeat domain
XP_057766203.1 Pfam PF13041 PPR_2 Repeat 303 351 2.5e-47 159.4 PPR repeat family
XP_057766203.1 Pfam PF01535 PPR Repeat 306 335 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF17177 PPR_long Repeat 321 419 7.8e-10 39.2 Pentacotripeptide-repeat region of PRORP
XP_057766203.1 Pfam PF01535 PPR Repeat 341 369 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF01535 PPR Repeat 378 402 6.7e-50 164.6 PPR repeat
XP_057766203.1 Pfam PF20431 E_motif Repeat 423 482 3.6e-12 47.1 E motif
XP_057766203.1 Pfam PF14432 DYW_deaminase Domain 519 611 1.2e-39 134.7 DYW family of nucleic acid deaminases
XP_057766204.1 Pfam PF01535 PPR Repeat 43 68 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF01535 PPR Repeat 145 172 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF01535 PPR Repeat 173 201 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF01535 PPR Repeat 204 234 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF01535 PPR Repeat 278 305 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF13812 PPR_3 Repeat 303 350 5.3e-14 52.8 Pentatricopeptide repeat domain
XP_057766204.1 Pfam PF13041 PPR_2 Repeat 303 351 2.5e-47 159.4 PPR repeat family
XP_057766204.1 Pfam PF01535 PPR Repeat 306 335 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF17177 PPR_long Repeat 321 419 7.8e-10 39.2 Pentacotripeptide-repeat region of PRORP
XP_057766204.1 Pfam PF01535 PPR Repeat 341 369 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF01535 PPR Repeat 378 402 6.7e-50 164.6 PPR repeat
XP_057766204.1 Pfam PF20431 E_motif Repeat 423 482 3.6e-12 47.1 E motif
XP_057766204.1 Pfam PF14432 DYW_deaminase Domain 519 611 1.2e-39 134.7 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XR_009089349.1
TTTTTACCTTTTGCCTAAAGGTAAAACAAAAGGACCGAAAATCTTCCCCTGGTAGATAAAAACCAGAAAATCACATTACCCAGCCCCGACTGCTGTTCCTTTAAACTCGAGAGGAATGAATGAATCATTTTGAGATTTTGCGTCAAATAAAGCAATGTATAAAGCTTCGTCTCCCAATGGAGGGCAAGAAACTCCATGCCCATGTCGTGAAATCCGGCTTCGACCGTCACGGCCCCCTTTTCTCCAACACGCTAATAGAT...
XR_009089350.1
TTTTTACCTTTTGCCTAAAGGTAAAACAAAAGGACCGAAAATCTTCCCCTGGTAGATAAAAACCAGAAAATCACATTACCCAGCCCCGACTGCTGTTCCTTTAAACTCGAGAGGAATGAATGAATCATTTTGAGATTTTGCGTCAAATAAAGCAATGTATAAAGCTTCGTCTCCCAATGGAGGGCAAGAAACTCCATGCCCATGTCGTGAAATCCGGCTTCGACCGTCACGGCCCCCTTTTCTCCAACACGCTAATAGAT...

CDS

2 records

下载 CDS FASTA
LOC130986726
ATGAATCATTTTGAGATTTTGCGTCAAATAAAGCAATGTATAAAGCTTCGTCTCCCAATGGAGGGCAAGAAACTCCATGCCCATGTCGTGAAATCCGGCTTCGACCGTCACGGCCCCCTTTTCTCCAACACGCTAATAGATATGTACGGCAAGTGCGGCTGCCTCAAAGACGCACTCCAACTGTTCGACGAAATGCCCAACAGAGACTTAGCGTCTTGGGCCTCGATTTTCACCTCACACAACCACGCCAACCTCCCCAA...
LOC130986726
ATGAATCATTTTGAGATTTTGCGTCAAATAAAGCAATGTATAAAGCTTCGTCTCCCAATGGAGGGCAAGAAACTCCATGCCCATGTCGTGAAATCCGGCTTCGACCGTCACGGCCCCCTTTTCTCCAACACGCTAATAGATATGTACGGCAAGTGCGGCTGCCTCAAAGACGCACTCCAACTGTTCGACGAAATGCCCAACAGAGACTTAGCGTCTTGGGCCTCGATTTTCACCTCACACAACCACGCCAACCTCCCCAA...

Protein

2 records

下载 Protein FASTA
XP_057766203.1
MNHFEILRQIKQCIKLRLPMEGKKLHAHVVKSGFDRHGPLFSNTLIDMYGKCGCLKDALQLFDEMPNRDLASWASIFTSHNHANLPKKTLFLYSDAVSKDNLRPDDFIYATLFNACAGCTALKIGEQLHAQFIVSISSDDDVVKSSLVDFYAKCGFPDRARKVFDSIVSKNVVCWTSLIYGYAKVGKKSESLDLLRDMPCKNSYTWKALISGFMQAGLCLDSFNLFKELRREGVDLDGPFVLSSLIVGSATLAMLELGKQ...
XP_057766204.1
MNHFEILRQIKQCIKLRLPMEGKKLHAHVVKSGFDRHGPLFSNTLIDMYGKCGCLKDALQLFDEMPNRDLASWASIFTSHNHANLPKKTLFLYSDAVSKDNLRPDDFIYATLFNACAGCTALKIGEQLHAQFIVSISSDDDVVKSSLVDFYAKCGFPDRARKVFDSIVSKNVVCWTSLIYGYAKVGKKSESLDLLRDMPCKNSYTWKALISGFMQAGLCLDSFNLFKELRREGVDLDGPFVLSSLIVGSATLAMLELGKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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