当前解析结果
SmilChr05G002106| 统一新 Gene ID | SmilChr05G002106 |
|---|---|
| 名称 | SmilChr05G002106 |
| 描述 | adenosylhomocysteinase |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 22065041 - 22067615 / - |
| NCBI Gene ID | LOC130986732 |
|---|---|
| GeneID | 130986732 |
| locus_tag | - |
| NCBI Name | LOC130986732 |
| 原始查询 | SmilChr05G002106 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | adenosylhomocysteinase |
| 产物 | adenosylhomocysteinase |
| Arabidopsis | AT4G13940 (HOG1)S-adenosyl-L-homocysteine hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:827028] identity=91.8; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0455500- identity=92.2; qcov=0.979; evalue=0; confidence=high |
| GO | GO:0004013 (adenosylhomocysteinase activity); GO:0005829 (cytosol); GO:0033353 (L-methionine cycle) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00670 (AdoHcyase_NAD); PF02826 (2-Hacid_dh_C); PF05221 (AdoHcyase); PF07991 (KARI_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057766212.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057766212.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766212.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766212.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766212.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:22065459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C28 |
Chr5:22065471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:22065594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B138,B27,C28 |
Chr5:22065708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C23,C86 |
Chr5:22065906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C71 |
Chr5:22065934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr5:22065969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B133,C15 |
Chr5:22066933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr5:22067111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:22067126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B19,B50,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766212.1PF05221
AdoHcyase 13-484 aa
PF00670
AdoHcyase_NAD 240-403 aa
PF07991
KARI_N 260-324 aa
PF02826
2-Hacid_dh_C 260-349 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766212.1 |
Pfam | PF05221 |
AdoHcyase | Domain | 13 | 484 | 1e-146 | 488.5 | S-adenosyl-L-homocysteine hydrolase |
XP_057766212.1 |
Pfam | PF00670 |
AdoHcyase_NAD | Domain | 240 | 403 | 3.2e-84 | 281.7 | S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
XP_057766212.1 |
Pfam | PF07991 |
KARI_N | Family | 260 | 324 | 7.4e-05 | 23.1 | Acetohydroxy acid isomeroreductase, NADPH-binding domain |
XP_057766212.1 |
Pfam | PF02826 |
2-Hacid_dh_C | Domain | 260 | 349 | 5.1e-08 | 33.2 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。