Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002137`

染色体: Chr05 坐标: 22489217-22499820 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002137`
名称	SmilChr05G002137
描述	gamma-cadinene synthase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	22489217 - 22499820 / `+`

ID 对照

NCBI Gene ID	`LOC130986755`
GeneID	`130986755`
locus_tag	`-`
NCBI Name	`LOC130986755`
原始查询	`SmilChr05G002137`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	gamma-cadinene synthase-like
产物	gamma-cadinene synthase-like
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=33.1; qcov=0.854; evalue=3.71e-70; confidence=low
Rice	`Os08g0139700` (OsTPS29) - identity=38.1; qcov=0.747; evalue=6.26e-71; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130986755

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057766248.1`
2	Cytoplasm	细胞质	0.60000	`XP_057766247.1`
3	Chloroplast	叶绿体	0.40000	`XP_057766250.1`
4	Nucleus	细胞核	0.00000	`XP_057766248.1`
5	Chromosome	染色体	0.00000	`XP_057766248.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:22494510`	`A`	`ACT`	2bp_insertion	frameshift_variant	3	B104,B44,D11
`Chr5:22494510`	`A`	`ACT`	2bp_insertion	CDS_variant	3	B104,B44,D11
`Chr5:22494553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,B72
`Chr5:22496014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr5:22496350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr5:22496393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C61,D6
`Chr5:22496599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr5:22496662`	`A`	`AAT`	2bp_insertion	stop_gained,frameshift_variant	6	A16,B102,B110,B34,B41,B78
`Chr5:22496832`	`A`	`AT`	1bp_insertion	frameshift_variant	58	A16,A2,A21,A3,B101,B102,B107,B108,B122,B126,B129,B131,B132,B133,B19,B26,B27,B28,B34,B37,B41,B49,B5,B51,B54,B6,B65,B67,B73,B79,B88,B89,B91,B92,C11,C16,C19,C22,C29,C33,C38,C39,C43,C5,C50,C59,C60,C63,C73,C77,C81,C9,D11,D2,D3,D4,D5,D8
`Chr5:22496833`	`TGG`	`T`	2bp_deletion	frameshift_variant	8	B134,B52,B65,B88,B96,C21,C55,C64
`Chr5:22496842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr5:22496919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766247.1

550 aa

275

550

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 29-197 aa PF03936 Terpene_synth_C 256-492 aa PF19086 Terpene_syn_C_2 294-492 aa

XP_057766248.1

549 aa

274

549

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 28-196 aa PF03936 Terpene_synth_C 255-491 aa PF19086 Terpene_syn_C_2 293-491 aa

XP_057766249.1

545 aa

272

545

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 24-192 aa PF03936 Terpene_synth_C 251-487 aa PF19086 Terpene_syn_C_2 289-487 aa

XP_057766250.1

468 aa

234

468

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 29-197 aa PF03936 Terpene_synth_C 256-369 aa PF19086 Terpene_syn_C_2 294-359 aa PF03936 Terpene_synth_C 371-410 aa PF19086 Terpene_syn_C_2 371-410 aa

XP_057766251.1

467 aa

234

467

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 28-196 aa PF03936 Terpene_synth_C 255-368 aa PF19086 Terpene_syn_C_2 293-358 aa PF03936 Terpene_synth_C 370-409 aa PF19086 Terpene_syn_C_2 370-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766247.1`	Pfam	`PF01397`	Terpene_synth	Repeat	29	197	2.8e-46	158.3	Terpene synthase, N-terminal domain
`XP_057766247.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	256	492	5.3e-78	262.4	Terpene synthase family, metal binding domain
`XP_057766247.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	294	492	2.9e-44	151.9	Terpene synthase family 2, C-terminal metal binding
`XP_057766248.1`	Pfam	`PF01397`	Terpene_synth	Repeat	28	196	4.2e-46	157.7	Terpene synthase, N-terminal domain
`XP_057766248.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	255	491	2.4e-78	263.5	Terpene synthase family, metal binding domain
`XP_057766248.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	293	491	3e-44	151.9	Terpene synthase family 2, C-terminal metal binding
`XP_057766249.1`	Pfam	`PF01397`	Terpene_synth	Repeat	24	192	2.8e-46	158.3	Terpene synthase, N-terminal domain
`XP_057766249.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	251	487	5.2e-78	262.4	Terpene synthase family, metal binding domain
`XP_057766249.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	289	487	2.9e-44	151.9	Terpene synthase family 2, C-terminal metal binding
`XP_057766250.1`	Pfam	`PF01397`	Terpene_synth	Repeat	29	197	2.1e-46	158.7	Terpene synthase, N-terminal domain
`XP_057766250.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	256	369	2e-44	152.4	Terpene synthase family, metal binding domain
`XP_057766250.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	294	359	1.1e-17	65.1	Terpene synthase family 2, C-terminal metal binding
`XP_057766250.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	371	410	2e-44	152.4	Terpene synthase family, metal binding domain
`XP_057766250.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	371	410	1.1e-17	65.1	Terpene synthase family 2, C-terminal metal binding
`XP_057766251.1`	Pfam	`PF01397`	Terpene_synth	Repeat	28	196	3.2e-46	158.1	Terpene synthase, N-terminal domain
`XP_057766251.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	255	368	2.3e-45	155.5	Terpene synthase family, metal binding domain
`XP_057766251.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	293	358	1.2e-17	65.1	Terpene synthase family 2, C-terminal metal binding
`XP_057766251.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	370	409	2.3e-45	155.5	Terpene synthase family, metal binding domain
`XP_057766251.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	370	409	1.2e-17	65.1	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057910265.1
ATCACAAATCATAATATTAAAGAGAGCTAATTAAATTTAGCATTATTTGAAACGATATAATGGCTGCAGCAAACATGGTGACTGCTATTTCAAGCAACGTGAGGCATATCCGCCCTCCCATCGTCACTTACAAGCCAAACATGTGGGGTCACATTTTCTCAACATTTTCTTACGATCATCAGGTGCAGGAGAAGTATAGCAAGGAAATGGAAGCATTGAAGAAAGAAATAAGAAGCATGCTAATGGCTGCCAAGTCTACC...

XM_057910268.1
CAAATCATAATATTAAAGAGAGCTAATTAAATTTAGCATTATTTGAAACGATATAATGGCTGCAGCAAACATGGTGACTGCTATTTCAAGCAACGTGAGGCATATCCGCCCTCCCATCGTCACTTACAAGCCAAACATGTGGGGTCACATTTTCTCAACATTTTCTTACGATCATCAGGTGCAGGAGAAGTATAGCAAGGAAATGGAAGCATTGAAGAAAGAAATAAGAAGCATGCTAATGGCTGCCAAGTCTACCAAAC...

CDS

5 records

下载 CDS FASTA

LOC130986755
ATGGCTGCAGCAAACATGGTGACTGCTATTTCAAGCAACGTGAGGCATATCCGCCCTCCCATCGTCACTTACAAGCCAAACATGTGGGGTCACATTTTCTCAACATTTTCTTACGATCATCAGGTGCAGGAGAAGTATAGCAAGGAAATGGAAGCATTGAAGAAAGAAATAAGAAGCATGCTAATGGCTGCCAAGTCTACCAAACTTATGGTTTTGATCGACCAAATTGAGCGTTTGGGACTCTCATATCATTTTGAGAT...

Protein

5 records

下载 Protein FASTA

XP_057766247.1
MAAANMVTAISSNVRTHIRPPIVTYKPSMWGHTFSTFSDHHQVQEKYSKEMEALKKEIRSMLMAAKSTKLMVLIDQIERLGLSYHFEIEIEEKLKQVYDAADDCDLFTTALRFRLLRQHQYHVSCTVFDKFVEKDCKWIGDRLRSDVEGILSLYEAAHVRIRDEKILDEALEFTVVELNHMLPTLESPTKEKVQQALKHSIHRSLPLLNIRFYISVYERDGTTNGLLLKLAKLNFNFLQNIYRKELAEIMRWWDKFDLKN...

XP_057766248.1
MAAANMVTAISSNVRHIRPPIVTYKPNMWGHIFSTFSYDHQVQEKYSKEMEALKKEIRSMLMAAKSTKLMVLIDQIERLGLSYHFEIEIEEKLKQVYDAADDCDLFTTALRFRLLRQHQYHVSCTVFDKFVEKDCKWIGDRLRSDVEGILSLYEAAHVRIRDEKILDEALEFTVVELNHMLPTLESPTKEKVQQALKHSIHRSLPLLNIRFYISVYERDGTTNGLLLKLAKLNFNFLQNIYRKELAEIMRWWDKFDLKNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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