当前解析结果
SmilChr05G002144| 统一新 Gene ID | SmilChr05G002144 |
|---|---|
| 名称 | SmilChr05G002144 |
| 描述 | uncharacterized SmilChr05G002144 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 22604656 - 22613557 / - |
| NCBI Gene ID | LOC131025667 |
|---|---|
| GeneID | 131025667 |
| locus_tag | - |
| NCBI Name | LOC131025667 |
| 原始查询 | SmilChr05G002144 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=low |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=35.5; qcov=0.446; evalue=8.25e-27; confidence=low |
| Rice | Os12g0597300- identity=31.9; qcov=0.574; evalue=2.92e-25; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025667 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811445.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057811445.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811445.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811445.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811445.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:22604667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr5:22604670 |
AC |
A |
1bp_deletion | frameshift_variant | 14 | A4,A9,B134,B15,B20,B3,B80,C14,C52,C63,D11,D2,D5,D9 |
Chr5:22604671 |
C |
CT |
1bp_insertion | frameshift_variant | 34 | A11,A5,B112,B113,B128,B132,B139,B2,B31,B32,B34,B43,B44,B47,B5,B6,B63,B73,B93,C23,C3,C30,C45,C47,C49,C58,C61,C68,C7,C8,C86,D1,D7,D8 |
Chr5:22604673 |
TA |
T |
1bp_deletion | frameshift_variant | 73 | A16,A21,A7,A9,B1,B100,B102,B107,B109,B11,B110,B12,B122,B123,B127,B138,B139,B14,B140,B15,B16,B2,B25,B26,B27,B35,B36,B37,B38,B39,B4,B42,B45,B47,B5,B50,B52,B59,B66,B68,B72,B73,B74,B77,B80,B83,B85,B90,B92,B97,C1,C16,C17,C30,C40,C45,C50,C54,C56,C59,C65,C7,C70,C74,C78,C79,C82,C9,D11,D2,D5,D6,D8 |
Chr5:22604680 |
TG |
T |
1bp_deletion | frameshift_variant | 37 | A16,B1,B109,B127,B139,B140,B15,B16,B27,B37,B38,B39,B42,B45,B5,B52,B72,B73,B74,B90,B92,B95,B97,C1,C17,C30,C50,C54,C56,C7,C70,C74,C78,C79,C9,D5,D6 |
Chr5:22604684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr5:22604689 |
GAC |
G |
2bp_deletion | frameshift_variant | 31 | A18,A22,A5,A6,B1,B110,B114,B120,B130,B23,B53,B62,B64,B74,B75,B87,B98,C11,C16,C21,C3,C5,C54,C56,C62,C78,C80,C83,C87,D10,D5 |
Chr5:22604692 |
G |
GTA |
2bp_insertion | frameshift_variant | 31 | A18,A22,A5,A6,B1,B110,B114,B120,B130,B23,B53,B62,B64,B74,B75,B87,B98,C11,C16,C21,C3,C5,C54,C56,C62,C78,C80,C83,C87,D10,D5 |
Chr5:22604702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B63,C54 |
Chr5:22604708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr5:22604712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr5:22604716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B5,B95,C1,C54,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811445.1PF10551
MULE 327-408 aa
PF00872
Transposase_mut 343-409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811445.1 |
Pfam | PF10551 |
MULE | Domain | 327 | 408 | 1.1e-12 | 48.9 | MULE transposase domain |
XP_057811445.1 |
Pfam | PF00872 |
Transposase_mut | Family | 343 | 409 | 5e-05 | 23.1 | Transposase, Mutator family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。