当前解析结果
SmilChr05G002209| 统一新 Gene ID | SmilChr05G002209 |
|---|---|
| 名称 | SmilChr05G002209 |
| 描述 | beta-galactosidase 3-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 23554888 - 23560180 / + |
| NCBI Gene ID | LOC130986767 |
|---|---|
| GeneID | 130986767 |
| locus_tag | - |
| NCBI Name | LOC130986767 |
| 原始查询 | SmilChr05G002209 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 3-like |
| 产物 | beta-galactosidase 3-like |
| Arabidopsis | AT4G36360 (BGAL3)beta-galactosidase 3 [Source:NCBI gene (formerly Entrezgene);Acc:829788] identity=66.1; qcov=0.999; evalue=0; confidence=high |
| Rice | Os03g0165400 (OsBgal1)- identity=68.2; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986767 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057766267.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057766267.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057766267.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766267.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766267.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:23555074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D8 |
Chr5:23555102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:23555193 |
C |
CCA |
2bp_insertion | frameshift_variant | 1 | A6 |
Chr5:23555193 |
C |
CCA |
2bp_insertion | CDS_variant | 1 | A6 |
Chr5:23555195 |
A |
ATC |
2bp_insertion | frameshift_variant | 1 | A6 |
Chr5:23555195 |
A |
ATC |
2bp_insertion | CDS_variant | 1 | A6 |
Chr5:23555492 |
AG |
A |
1bp_deletion | frameshift_variant | 24 | A2,A21,A7,B10,B125,B13,B139,B34,B42,B43,B47,B51,B58,B65,B75,C13,C5,C56,C65,C76,C83,D10,D6,D7 |
Chr5:23555939 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | A7 |
Chr5:23555939 |
TCC |
T |
2bp_deletion | CDS_variant | 1 | A7 |
Chr5:23557167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C43 |
Chr5:23557190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B26,B61,B8 |
Chr5:23557195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766267.1PF01301
Glyco_hydro_35 36-340 aa
PF02449
Glyco_hydro_42 58-204 aa
PF17834
GHD 363-419 aa
PF21467
BetaGal_gal-bd 472-539 aa
PF21467
BetaGal_gal-bd 622-706 aa
PF02140
SUEL_Lectin 763-840 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766267.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 36 | 340 | 7.7e-123 | 410.9 | Glycosyl hydrolases family 35 |
XP_057766267.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 58 | 204 | 1.1e-06 | 29.0 | Beta-galactosidase |
XP_057766267.1 |
Pfam | PF17834 |
GHD | Domain | 363 | 419 | 1.1e-25 | 89.8 | Beta-sandwich domain in beta galactosidase |
XP_057766267.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 472 | 539 | 2e-37 | 127.9 | Beta-galactosidase, galactose-binding domain |
XP_057766267.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 622 | 706 | 2e-37 | 127.9 | Beta-galactosidase, galactose-binding domain |
XP_057766267.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 763 | 840 | 3.6e-22 | 79.2 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。