Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002250`

染色体: Chr05 坐标: 24171213-24173654 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002250`
名称	SmilChr05G002250
描述	transcription factor FAMA
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24171213 - 24173654 / `-`

ID 对照

NCBI Gene ID	`LOC131024160`
GeneID	`131024160`
locus_tag	`-`
NCBI Name	`LOC131024160`
原始查询	`SmilChr05G002250`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor FAMA
产物	transcription factor FAMA
Arabidopsis	`AT3G24140` (FMA) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822000] identity=59.8; qcov=1.02; evalue=1.37e-139; confidence=high
Rice	`Os05g0586300` (OsbHLH051) - identity=49.9; qcov=0.987; evalue=2.5e-102; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0010052 (guard cell differentiation); GO:0010374 (stomatal complex development); GO:0045893 (positive regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH); PF22754 (bHLH-TF_ACT-like_plant)
InterPro	-
eggNOG	-
NR	GeneID:131024160

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809643.1`
2	Chromosome	染色体	0.00000	`XP_057809643.1`
3	Centromere	着丝粒	0.00000	`XP_057809643.1`
4	Chromatin	染色质	0.00000	`XP_057809643.1`
5	Telomere	端粒	0.00000	`XP_057809643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24171692`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B133,C15
`Chr5:24171892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:24171907`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B97
`Chr5:24171907`	`CT`	`C`	1bp_deletion	CDS_variant	1	B97
`Chr5:24172530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,A23,B131,B93,C43
`Chr5:24172548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:24172591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr5:24172727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809643.1

385 aa

192

385

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 184-235 aa PF22754 bHLH-TF_ACT-like_plant 300-376 aa

XP_057809644.1

380 aa

190

380

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 179-230 aa PF22754 bHLH-TF_ACT-like_plant 295-371 aa

XP_057809645.1

380 aa

190

380

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 179-230 aa PF22754 bHLH-TF_ACT-like_plant 295-371 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809643.1`	Pfam	`PF00010`	HLH	Domain	184	235	5e-12	46.2	Helix-loop-helix DNA-binding domain
`XP_057809643.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	300	376	4e-07	30.8	Plant bHLH transcription factor, ACT-like domain
`XP_057809644.1`	Pfam	`PF00010`	HLH	Domain	179	230	4.9e-12	46.2	Helix-loop-helix DNA-binding domain
`XP_057809644.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	295	371	3.9e-07	30.8	Plant bHLH transcription factor, ACT-like domain
`XP_057809645.1`	Pfam	`PF00010`	HLH	Domain	179	230	4.9e-12	46.2	Helix-loop-helix DNA-binding domain
`XP_057809645.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	295	371	3.9e-07	30.8	Plant bHLH transcription factor, ACT-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057953662.1
GACTCATCAATCACACACACACACATATACATATACATGGATCGACATTATAAAGTTAAAAGATTCAGACAACAATATCACCCAACTCCATTTTCTTTCAGATAAGTTTTTGGTGGACCCTTTTGAGCTGTAAAAAGCCCACCTAGGGTTTCGGCTAATCACACACATCTATGGAGAAAGAAGGGAATTACATGGCAAATTTTGCTGGACTTGATTATGAGCTTAACAATCATCAACAACAACAAGATTCAATGAATCAA...

XM_057953661.1
AGACAACAATATCACCCAACTCCATTTTCTTTCAGATAAGTATGTATATTCATTCATCACAAACAATATTTTTCGATAATTTGTCTCTAACTTTCTGTACAAAATTCACTCTTGAATTTTCCACTCTCTTTCTCAAGGATGGTATAGCAAGAGTGTTGTTTTCATCATGGTTTTTGGTGGACCCTTTTGAGCTGTAAAAAGCCCACCTAGGGTTTCGGCTAATCACACACATCTATGGAGAAAGAAGGGAATTACATGGC...

CDS

3 records

下载 CDS FASTA

LOC131024160
ATGGAGAAAGAAGGGAATTACATGGCAAATTTTGCTGGACTTGATTATGAGCTTAACAATCATCAACAACAACAAGATTCAATGAATCAAGAAATGGGAGCAACATCTGCAGATCAGAACAGCAGCCAAATCGTAGAATACATGCTGCATAATCCACCACAACACCACCAACCATCATCCAACTTTTGCGGGTCGAATTCATTTGACAAGTTGAGTTTTGCAGATGTGATGCAGTTTGCAGACTTGGGCCCCAAACTGGG...

Protein

3 records

下载 Protein FASTA

XP_057809643.1
MKMLSYLEPCVWQANFAGLDYELNNHQQQQDSMNQEMGATSADQNSSQIVEYMLHNPPQHHQPSSNFCGSNSFDKLSFADVMQFADLGPKLGLNQGKTSEEEGGIDPVFFLKFPVLNDHHKVQQDDENQHLSLREDEQGGDDDGDRVEENAQLRFVGENLEKVEGKSKRKRPRTSKTIEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPSSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLYGDGGRPAGDP...

XP_057809644.1
MEKEGNYMANFAGLDYELNNHQQQQDSMNQEMGATSADQNSSQIVEYMLHNPPQHHQPSSNFCGSNSFDKLSFADVMQFADLGPKLGLNQGKTSEEEGGIDPVFFLKFPVLNDHHKVQQDDENQHLSLREDEQGGDDDGDRVEENAQLRFVGENLEKVEGKSKRKRPRTSKTIEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPSSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLYGDGGRPAGDPSSMGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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