当前解析结果
SmilChr05G002258| 统一新 Gene ID | SmilChr05G002258 |
|---|---|
| 名称 | SmilChr05G002258 |
| 描述 | uncharacterized SmilChr05G002258 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 24299229 - 24302171 / + |
| NCBI Gene ID | LOC131025690 |
|---|---|
| GeneID | 131025690 |
| locus_tag | - |
| NCBI Name | LOC131025690 |
| 原始查询 | SmilChr05G002258 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=32.2; qcov=0.109; evalue=1.79e-07; confidence=weak |
| Rice | Os04g0191000- identity=24.2; qcov=0.336; evalue=3.41e-10; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025690 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057811464.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811464.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811464.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811464.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811464.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:24299286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr5:24299310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:24299316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B13,B90 |
Chr5:24299320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C38 |
Chr5:24299365 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B124,B84 |
Chr5:24299365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B84 |
Chr5:24299366 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B56 |
Chr5:24299366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr5:24299373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B131,B84,C55 |
Chr5:24299379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B18,B21,C35,C82 |
Chr5:24299381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr5:24299385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B40,C51,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811464.1PF17919
RT_RNaseH_2 46-144 aa
PF17917
RT_RNaseH 74-173 aa
PF13456
RVT_3 209-327 aa
PF00665
rve 433-530 aa
PF31073
DUF8803 654-692 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811464.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 46 | 144 | 3e-18 | 66.4 | RNase H-like domain found in reverse transcriptase |
XP_057811464.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 74 | 173 | 1e-13 | 52.1 | RNase H-like domain found in reverse transcriptase |
XP_057811464.1 |
Pfam | PF13456 |
RVT_3 | Domain | 209 | 327 | 1e-15 | 58.4 | Reverse transcriptase-like |
XP_057811464.1 |
Pfam | PF00665 |
rve | Domain | 433 | 530 | 1.3e-19 | 71.0 | Integrase core domain |
XP_057811464.1 |
Pfam | PF31073 |
DUF8803 | Domain | 654 | 692 | 3.1e-08 | 34.1 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。