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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002262

染色体: Chr05 坐标: 24331720-24335140 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002262
名称SmilChr05G002262
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向24331720 - 24335140 / -

ID 对照

NCBI Gene IDLOC131024167
GeneID131024167
locus_tag-
NCBI NameLOC131024167
原始查询SmilChr05G002262

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=35; qcov=0.886; evalue=3.28e-126; confidence=low
RiceOs03g0597200 (YSA)
-
identity=31.7; qcov=0.921; evalue=1.28e-87; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131024167

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057809651.1
2 Chloroplast 叶绿体 0.20000 XP_057809651.1
3 Nucleus 细胞核 0.00000 XP_057809651.1
4 Chromosome 染色体 0.00000 XP_057809651.1
5 Centromere 着丝粒 0.00000 XP_057809651.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:24333189 G A EMS_canonical_SNV stop_gained 1 B37
Chr5:24333189 G A EMS_canonical_SNV CDS_variant 1 B37
Chr5:24333441 C T EMS_canonical_SNV CDS_variant 1 B66
Chr5:24333547 C T EMS_canonical_SNV CDS_variant 2 B107,C28
Chr5:24333599 C T EMS_canonical_SNV CDS_variant 1 C44
Chr5:24333698 C T EMS_canonical_SNV CDS_variant 2 B121,C4
Chr5:24333853 C T EMS_canonical_SNV CDS_variant 2 C16,C38
Chr5:24333951 C T EMS_canonical_SNV CDS_variant 1 C85
Chr5:24334618 GA G 1bp_deletion frameshift_variant 5 B108,B109,B113,C45,C7
Chr5:24334618 GA G 1bp_deletion CDS_variant 5 B108,B109,B113,C45,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809651.1
604 aa
N
1
302
604
PPR_3
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13812 PPR_3 66-124 aa PF13041 PPR_2 77-125 aa PF01535 PPR 81-107 aa PF12854 PPR_1 143-174 aa PF01535 PPR 151-175 aa PF23276 TPR_24 188-309 aa PF01535 PPR 190-211 aa PF17177 PPR_long 202-302 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 218-246 aa PF13041 PPR_2 218-253 aa PF01535 PPR 222-251 aa PF01535 PPR 256-286 aa PF13041 PPR_2 256-302 aa PF12854 PPR_1 285-316 aa PF01535 PPR 291-319 aa PF23276 TPR_24 312-418 aa PF13812 PPR_3 316-371 aa PF12854 PPR_1 321-349 aa PF13041 PPR_2 324-371 aa PF01535 PPR 326-356 aa PF12854 PPR_1 354-385 aa PF13041 PPR_2 358-405 aa PF01535 PPR 361-391 aa PF13812 PPR_3 382-438 aa PF13041 PPR_2 395-442 aa PF01535 PPR 397-425 aa PF17177 PPR_long 411-500 aa PF12854 PPR_1 426-457 aa PF01535 PPR 431-461 aa PF13041 PPR_2 435-477 aa PF13812 PPR_3 451-509 aa PF12854 PPR_1 459-490 aa PF13041 PPR_2 463-500 aa PF01535 PPR 466-495 aa PF23276 TPR_24 468-556 aa PF12854 PPR_1 495-527 aa PF13041 PPR_2 498-547 aa PF01535 PPR 502-531 aa PF13812 PPR_3 517-543 aa PF12854 PPR_1 530-561 aa PF13041 PPR_2 533-578 aa PF01535 PPR 536-565 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809651.1 Pfam PF13812 PPR_3 Repeat 66 124 2.1e-66 220.6 Pentatricopeptide repeat domain
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 77 125 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 81 107 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 143 174 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF01535 PPR Repeat 151 175 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF23276 TPR_24 Repeat 188 309 6.2e-39 133.7 Pentatricopeptide repeat-containing protein
XP_057809651.1 Pfam PF01535 PPR Repeat 190 211 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF17177 PPR_long Repeat 202 302 1.4e-31 110.2 Pentacotripeptide-repeat region of PRORP
XP_057809651.1 Pfam PF13812 PPR_3 Repeat 207 265 2.1e-66 220.6 Pentatricopeptide repeat domain
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 218 246 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 218 253 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 222 251 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF01535 PPR Repeat 256 286 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 256 302 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 285 316 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF01535 PPR Repeat 291 319 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF23276 TPR_24 Repeat 312 418 6.2e-39 133.7 Pentatricopeptide repeat-containing protein
XP_057809651.1 Pfam PF13812 PPR_3 Repeat 316 371 2.1e-66 220.6 Pentatricopeptide repeat domain
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 321 349 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 324 371 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 326 356 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 354 385 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 358 405 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 361 391 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF13812 PPR_3 Repeat 382 438 2.1e-66 220.6 Pentatricopeptide repeat domain
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 395 442 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 397 425 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF17177 PPR_long Repeat 411 500 1.4e-31 110.2 Pentacotripeptide-repeat region of PRORP
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 426 457 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF01535 PPR Repeat 431 461 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 435 477 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF13812 PPR_3 Repeat 451 509 2.1e-66 220.6 Pentatricopeptide repeat domain
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 459 490 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 463 500 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 466 495 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF23276 TPR_24 Repeat 468 556 6.2e-39 133.7 Pentatricopeptide repeat-containing protein
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 495 527 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 498 547 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 502 531 1e-95 308.2 PPR repeat
XP_057809651.1 Pfam PF13812 PPR_3 Repeat 517 543 2.1e-66 220.6 Pentatricopeptide repeat domain
XP_057809651.1 Pfam PF12854 PPR_1 Repeat 530 561 5.1e-119 388.3 PPR repeat
XP_057809651.1 Pfam PF13041 PPR_2 Repeat 533 578 4.1e-140 456.5 PPR repeat family
XP_057809651.1 Pfam PF01535 PPR Repeat 536 565 1e-95 308.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057953668.1
GTAGGAGCTACTAACCACCTCCTATTTTCTCTCCCTTTATCTCCACTCTCTCTAGTAATCAGCCGACTCATTTGTCCTCTCTTTGACTTAGTCGAATACCTACGAAATACACGTGAAGAAGACAAAACATACCAAAACTTTAGGAAAGTTTTATGGAGTTAAAAATTAACTCCAACAGATTTCATTTCTTGAACTGTTTCTTTACACGGTGAACTAAATGAGCCGAAAAGCCGCTTCATCTGCATTTCAACTTATTCCAA...

CDS

1 records

下载 CDS FASTA
LOC131024167
ATGAGCCGAAAAGCCGCTTCATCTGCATTTCAACTTATTCCAAGAGGAATTTTGGTTAAATCTTCGCATATATCCACTACTTTCCCCCCTTCACTCACGGATTCCTGTTCAAATTTCCATAATATCGGCCACCCTTTCTCGCCGAAACCTGCAATAGACTTCAGCTGTATCAATAAACTAGATGATGCTCTCTGCCTGTTTCAACAAATGGTTAGAATGCGACCGCAGCCATCTGTCCGGGTATACAACAAACTGTTGAC...

Protein

1 records

下载 Protein FASTA
XP_057809651.1
MSRKAASSAFQLIPRGILVKSSHISTTFPPSLTDSCSNFHNIGHPFSPKPAIDFSCINKLDDALCLFQQMVRMRPQPSVRVYNKLLTVISKMKHYSVALNVFDEMRQTGAPVNEFTMNILIDCCCLSNRAHFGFAILGSFYKRGYEPDATTFSTLIKGLFLDHKVAEAEKLFKKILILKFCEPSDVMTLTVINGLCKAGLAATAHELLRRLARTRWKPGVKAYNAVIDTLCKSGMLDEAFELLSVMTEKGISPIISTYNP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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