当前解析结果
SmilChr05G002263| 统一新 Gene ID | SmilChr05G002263 |
|---|---|
| 名称 | SmilChr05G002263 |
| 描述 | uncharacterized SmilChr05G002263 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 24340519 - 24344991 / + |
| NCBI Gene ID | LOC131025694 |
|---|---|
| GeneID | 131025694 |
| locus_tag | - |
| NCBI Name | LOC131025694 |
| 原始查询 | SmilChr05G002263 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=34.1; qcov=0.086; evalue=8.51e-17; confidence=weak |
| Rice | Os12g0142900- identity=31.5; qcov=0.271; evalue=2.99e-64; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025694 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057811467.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811467.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811467.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811467.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811467.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:24340533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B25 |
Chr5:24340578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,B63,B79 |
Chr5:24340601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B25 |
Chr5:24340605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B140,B71,C28,C46,C8 |
Chr5:24340635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C36,C60,C61 |
Chr5:24340654 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | C2,C32,C68 |
Chr5:24340654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr5:24340655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C83 |
Chr5:24340656 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C40 |
Chr5:24340656 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C40 |
Chr5:24340659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B12,B44,C40,C70 |
Chr5:24340668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811467.1PF00078
RVT_1 481-641 aa
PF17919
RT_RNaseH_2 704-801 aa
PF17917
RT_RNaseH 730-833 aa
PF00075
RNase_H 883-1004 aa
PF13456
RVT_3 885-1004 aa
PF17921
Integrase_H2C2 1104-1157 aa
PF00665
rve 1177-1272 aa
PF31073
DUF8803 1399-1463 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811467.1 |
Pfam | PF00078 |
RVT_1 | Domain | 481 | 641 | 8.8e-35 | 121.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811467.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 704 | 801 | 2.3e-23 | 82.8 | RNase H-like domain found in reverse transcriptase |
XP_057811467.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 730 | 833 | 1.4e-23 | 83.7 | RNase H-like domain found in reverse transcriptase |
XP_057811467.1 |
Pfam | PF00075 |
RNase_H | Domain | 883 | 1004 | 9.6e-08 | 33.0 | RNase H |
XP_057811467.1 |
Pfam | PF13456 |
RVT_3 | Domain | 885 | 1004 | 2.9e-20 | 73.1 | Reverse transcriptase-like |
XP_057811467.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1104 | 1157 | 1.2e-08 | 35.7 | Integrase zinc binding domain |
XP_057811467.1 |
Pfam | PF00665 |
rve | Domain | 1177 | 1272 | 2.1e-12 | 47.9 | Integrase core domain |
XP_057811467.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1399 | 1463 | 7.7e-13 | 48.8 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。