Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002268`

染色体: Chr05 坐标: 24390986-24395873 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002268`
名称	SmilChr05G002268
描述	F-box protein PP2-B10-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24390986 - 24395873 / `-`

ID 对照

NCBI Gene ID	`LOC131024173`
GeneID	`131024173`
locus_tag	`-`
NCBI Name	`LOC131024173`
原始查询	`SmilChr05G002268`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein PP2-B10-like
产物	F-box protein PP2-B10-like
Arabidopsis	`AT2G02240` (MEE66) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:814755] identity=44.6; qcov=0.706; evalue=6.98e-51; confidence=medium
Rice	`Os02g0813350` (OsFbox120) - identity=40.5; qcov=0.777; evalue=1.72e-48; confidence=medium
GO	-
KEGG	-
Pfam	PF14299 (PP2)
InterPro	-
eggNOG	-
NR	GeneID:131024173

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809658.1`
2	Cytoplasm	细胞质	0.80000	`XP_057809658.1`
3	Cytosol	细胞质基质	0.40000	`XP_057809658.1`
4	Chromosome	染色体	0.00000	`XP_057809658.1`
5	Centromere	着丝粒	0.00000	`XP_057809658.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24391284`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B38
`Chr5:24391284`	`TC`	`T`	1bp_deletion	CDS_variant	1	B38
`Chr5:24391357`	`C`	`CT`	1bp_insertion	frameshift_variant	112	A11,A16,A19,A21,A22,A24,A3,A4,A6,A7,B10,B100,B102,B103,B106,B107,B109,B11,B110,B114,B117,B12,B120,B124,B127,B128,B129,B130,B131,B132,B137,B139,B14,B15,B16,B17,B18,B21,B26,B29,B30,B34,B36,B38,B39,B4,B41,B42,B43,B45,B46,B47,B50,B54,B55,B57,B59,B6,B60,B61,B63,B66,B67,B72,B73,B74,B8,B83,B85,B86,B87,B90,B91,B92,B95,C10,C11,C18,C20,C21,C27,C30,C31,C33,C37,C41,C43,C44,C49,C50,C51,C53,C54,C55,C57,C60,C62,C63,C64,C66,C67,C69,C70,C71,C73,C76,C79,C82,C83,C84,D5,D9
`Chr5:24391542`	`C`	`CTG`	2bp_insertion	frameshift_variant	1	B24
`Chr5:24391542`	`C`	`CTG`	2bp_insertion	CDS_variant	1	B24
`Chr5:24391544`	`GTA`	`G`	2bp_deletion	frameshift_variant	1	B24
`Chr5:24391544`	`GTA`	`G`	2bp_deletion	CDS_variant	1	B24
`Chr5:24395240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr5:24395325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,D5
`Chr5:24395343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:24395549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B109,B113,C45,C7
`Chr5:24395688`	`GA`	`G`	1bp_deletion	frameshift_variant	7	B100,B125,B53,B7,C11,C40,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809658.1

365 aa

182

365

PP2

PF14299 PP2 162-363 aa

XP_057809660.1

327 aa

164

327

PP2

PF14299 PP2 162-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809658.1`	Pfam	`PF14299`	PP2	Family	162	363	2.4e-44	151.6	Phloem protein 2
`XP_057809660.1`	Pfam	`PF14299`	PP2	Family	162	325	2.3e-45	154.9	Phloem protein 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953675.1
GACAAAGAAATTAAAATAACAAAAAGAAAAAATTAAAGAGACATGTCGTCGGCGTGTCGAGACAACTGGGAGAGGCTGATGGCGATAGTGTTGAAGAGACAACAGTATTTGGAGCTGTGTAACAAGCCACACTCAAGAAGCCCCAGCACCAGCACCATTTCTTCTGATTTCAGTGAAGAATCTCTCAGTCAAGAATTAGGGTTCGTTTCTCAATTTCCATTTCCTCAACGTCCGTCCCTATCCCAAGCTGTGGGCAACAA...

XM_057953677.1
GAAATTAAAATAACAAAAAGAAAAAATTAAAGAGACATGTCGTCGGCGTGTCGAGACAACTGGGAGAGGCTGATGGCGATAGTGTTGAAGAGACAACAGTATTTGGAGCTGTGTAACAAGCCACACTCAAGAAGCCCCAGCACCAGCACCATTTCTTCTGATTTCAGTGAAGAATCTCTCAGTCAAGAATTAGGGTTCGTTTCTCAATTTCCATTTCCTCAACGTCCGTCCCTATCCCAAGCTGTGGGCAACAATACCAT...

CDS

2 records

下载 CDS FASTA

LOC131024173
ATGTCGTCGGCGTGTCGAGACAACTGGGAGAGGCTGATGGCGATAGTGTTGAAGAGACAACAGTATTTGGAGCTGTGTAACAAGCCACACTCAAGAAGCCCCAGCACCAGCACCATTTCTTCTGATTTCAGTGAAGAATCTCTCAGTCAAGAATTAGGGTTCGTTTCTCAATTTCCATTTCCTCAACGTCCGTCCCTATCCCAAGCTGTGGGCAACAATACCATTACACGGAGGCTATTTTCTCCTTGGTACCAAAGCAG...

Protein

2 records

下载 Protein FASTA

XP_057809658.1
MSSACRDNWERLMAIVLKRQQYLELCNKPHSRSPSTSTISSDFSEESLSQELGFVSQFPFPQRPSLSQAVGNNTITRRLFSPWYQSRKMESPLEILRPTSLADASDAVWDRFLPSDLLQIVSRSVSPVVYANKKELYSRLCHSPILIDAGKLSFCLEKESGKKCYMVGASDLRIIWCGDSPQYWDLVSDKNSRFSKVAVLKSVCWLEIQGTIDTRMLSSNTIYGAYLVFKLDDRKAYGLKSANAFVRFTEDKVDGGDTRN...

XP_057809660.1
MSSACRDNWERLMAIVLKRQQYLELCNKPHSRSPSTSTISSDFSEESLSQELGFVSQFPFPQRPSLSQAVGNNTITRRLFSPWYQSRKMESPLEILRPTSLADASDAVWDRFLPSDLLQIVSRSVSPVVYANKKELYSRLCHSPILIDAGKLSFCLEKESGKKCYMVGASDLRIIWCGDSPQYWDLVSDKNSRFSKVAVLKSVCWLEIQGTIDTRMLSSNTIYGAYLVFKLDDRKAYGLKSANAFVRIGDGLTEIVAVHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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