当前解析结果
SmilChr05G002278| 统一新 Gene ID | SmilChr05G002278 |
|---|---|
| 名称 | SmilChr05G002278 |
| 描述 | ethylene-responsive transcription factor ERF025-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 24493579 - 24494562 / - |
| NCBI Gene ID | LOC131024182 |
|---|---|
| GeneID | 131024182 |
| locus_tag | - |
| NCBI Name | LOC131024182 |
| 原始查询 | SmilChr05G002278 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor ERF025-like |
| 产物 | ethylene-responsive transcription factor ERF025-like |
| Arabidopsis | AT5G52020 (AT5G52020)Integrase-type DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835277] identity=55.1; qcov=0.989; evalue=7.97e-50; confidence=medium |
| Rice | Os04g0572200 (OsERF#023)- identity=51.4; qcov=0.972; evalue=1.05e-40; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00847 (AP2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024182 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809666.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057809666.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057809666.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057809666.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057809666.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:24493882 |
C |
CCT |
2bp_insertion | frameshift_variant | 5 | A18,B126,B13,B140,B81 |
Chr5:24493882 |
C |
CCT |
2bp_insertion | CDS_variant | 5 | A18,B126,B13,B140,B81 |
Chr5:24493885 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | A20,B30,C15,C36,C70,C75,C9 |
Chr5:24493896 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A20,B30,C15,C36,C70,C75 |
Chr5:24493925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr5:24494080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr5:24494088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:24494160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:24494236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:24494272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C82 |
Chr5:24494357 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B78 |
Chr5:24494357 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057809666.1PF00847
AP2 20-69 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809666.1 |
Pfam | PF00847 |
AP2 | Domain | 20 | 69 | 5.7e-12 | 46.5 | AP2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。