Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002280`

染色体: Chr05 坐标: 24508821-24518921 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002280`
名称	SmilChr05G002280
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24508821 - 24518921 / `-`

ID 对照

NCBI Gene ID	`LOC131024184`
GeneID	`131024184`
locus_tag	`-`
NCBI Name	`LOC131024184`
原始查询	`SmilChr05G002280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT1G58390` (AT1G58390) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=31.18; qcov=0.996; evalue=9.0e-128; confidence=low
Rice	`Os07g0186500` - identity=27.36; qcov=0.996; evalue=1.06e-75; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF24883 (NPHP3_N)
InterPro	-
eggNOG	-
NR	GeneID:131024184

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057809669.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24509248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr5:24509256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,C4
`Chr5:24509338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr5:24509396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr5:24509526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:24509528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B2
`Chr5:24509533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B122,C28,C86
`Chr5:24509539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr5:24509620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr5:24509625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr5:24509627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B5,B59,C81
`Chr5:24509632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,B35,C71,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809669.1

954 aa

477

954

Rx_N

AAA_16

NB-ARC

NPHP3_N

WHD_DRP

LRR_14

PF18052 Rx_N 5-89 aa PF13191 AAA_16 167-296 aa PF00931 NB-ARC 171-355 aa PF24883 NPHP3_N 183-323 aa PF23559 WHD_DRP 450-526 aa PF23598 LRR_14 604-902 aa

XP_057809670.1

928 aa

464

928

Rx_N

AAA_16

NB-ARC

NPHP3_N

WHD_DRP

LRR_14

PF18052 Rx_N 3-63 aa PF13191 AAA_16 141-270 aa PF00931 NB-ARC 145-329 aa PF24883 NPHP3_N 157-297 aa PF23559 WHD_DRP 424-500 aa PF23598 LRR_14 578-876 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809669.1`	Pfam	`PF18052`	Rx_N	Domain	5	89	1.3e-18	67.6	Rx N-terminal domain
`XP_057809669.1`	Pfam	`PF13191`	AAA_16	Domain	167	296	3.2e-08	35.0	AAA ATPase domain
`XP_057809669.1`	Pfam	`PF00931`	NB-ARC	Domain	171	355	2.5e-32	112.5	NB-ARC domain
`XP_057809669.1`	Pfam	`PF24883`	NPHP3_N	Domain	183	323	2.7e-07	31.6	Nephrocystin 3, N-terminal
`XP_057809669.1`	Pfam	`PF23559`	WHD_DRP	Domain	450	526	1.2e-11	45.1	Disease resistance protein Winged helix domain
`XP_057809669.1`	Pfam	`PF23598`	LRR_14	Repeat	604	902	1.3e-27	97.2	Leucine-rich repeat region
`XP_057809670.1`	Pfam	`PF18052`	Rx_N	Domain	3	63	6.9e-11	42.8	Rx N-terminal domain
`XP_057809670.1`	Pfam	`PF13191`	AAA_16	Domain	141	270	3.1e-08	35.0	AAA ATPase domain
`XP_057809670.1`	Pfam	`PF00931`	NB-ARC	Domain	145	329	2.5e-32	112.6	NB-ARC domain
`XP_057809670.1`	Pfam	`PF24883`	NPHP3_N	Domain	157	297	2.6e-07	31.7	Nephrocystin 3, N-terminal
`XP_057809670.1`	Pfam	`PF23559`	WHD_DRP	Domain	424	500	1.2e-11	45.2	Disease resistance protein Winged helix domain
`XP_057809670.1`	Pfam	`PF23598`	LRR_14	Repeat	578	876	1.3e-27	97.2	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953687.1
TTTTCTGTTAGAATTTTTTGCAGTTCTCCTCAGAAAACTAAGGGCGGGTTTGATCGGTACGAGAAAACTAGAAAGAATTTTCTTTGTGGAAATGCTAGTTTGACATCATGTGCTGCAAAGCGACCTCAATTTCGATGCAATCACTTATAAATGGGTGCGCGGGAACGAAGATGAATTTATTGAAGAGAGGCTGTGGTCTCCTTTGCTCTGCAAGAAATCCGCAATTTGCTGGTGGAGGAAGGAAAGCTGCTATCTGGCAT...

XM_057953686.1
TACAAAAAGTGATTATTATATCGTCTAGTTTGCCATATCAAAGTTATTCCAATCTTGCTTTCTTGCCTCAAAAAAAAATCTTGCTTTCACTGTTACTGAATTGATTTTCCGTCCTAACGATCACCAAACATATGAACAAATCAAAGTATTTGTTGTGTATACTAAATAAGTCCTCACACAACACACCAACAAAAATACTCCAAACCATCTAATAAAATTATTGCAATGGCAGAGGCTGTGGTCTCCTTTGCTCTGCAAGA...

CDS

2 records

下载 CDS FASTA

lcl|NC_080391.1_cds_XP_057809669.1_27961
ATGGCAGAGGCTGTGGTCTCCTTTGCTCTGCAAGAAATCCGCAATTTGCTGGTGGAGGAAGGAAAGCTGCTATCTGGCATGGGTGGTGAAGTGAAGGCGCTTGAGAAGCAGCTGAAAGAGATGAAGTATCTCCTCGAAGATGCTGACAGAAGACGACATGAAAGCAAAACCATTGGCAATTGGATTGCAGAGATCAGAGATCTTGTATACAAGGCTGAAGCTGCCATTGAAATACATGCTGCTCGAGTGTCTTCAAGGAG...

lcl|NC_080391.1_cds_XP_057809670.1_27962
ATGGGTGGTGAAGTGAAGGCGCTTGAGAAGCAGCTGAAAGAGATGAAGTATCTCCTCGAAGATGCTGACAGAAGACGACATGAAAGCAAAACCATTGGCAATTGGATTGCAGAGATCAGAGATCTTGTATACAAGGCTGAAGCTGCCATTGAAATACATGCTGCTCGAGTGTCTTCAAGGAGAAGACAAGGCCTGAAAAAGCTCCTCGGCAAATACACTTGTATCCTCAAAGAATGCTACTCACTCCACCAACTAGCCAC...

Protein

2 records

下载 Protein FASTA

XP_057809669.1
MAEAVVSFALQEIRNLLVEEGKLLSGMGGEVKALEKQLKEMKYLLEDADRRRHESKTIGNWIAEIRDLVYKAEAAIEIHAARVSSRRRQGLKKLLGKYTCILKECYSLHQLATEVSGIKSELARIDKDMQENGIKRSIINATERSTTSDNQNWTRKTFPNFEIDDCFVGKQDDVKQIISLVVDDKEHRVISVWGMGGIGKTTIVKRVYNQIVETKKGCFESFAWVCITQQCRVRSTLEDVLKQLIPQINEEILSLSSMQQ...

XP_057809670.1
MGGEVKALEKQLKEMKYLLEDADRRRHESKTIGNWIAEIRDLVYKAEAAIEIHAARVSSRRRQGLKKLLGKYTCILKECYSLHQLATEVSGIKSELARIDKDMQENGIKRSIINATERSTTSDNQNWTRKTFPNFEIDDCFVGKQDDVKQIISLVVDDKEHRVISVWGMGGIGKTTIVKRVYNQIVETKKGCFESFAWVCITQQCRVRSTLEDVLKQLIPQINEEILSLSSMQQLSQKGEDLSSVSDTELIKRLCQVQRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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