Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002281`

染色体: Chr05 坐标: 24536172-24538311 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002281`
名称	SmilChr05G002281
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24536172 - 24538311 / `-`

ID 对照

NCBI Gene ID	`LOC131024186`
GeneID	`131024186`
locus_tag	`-`
NCBI Name	`LOC131024186`
原始查询	`SmilChr05G002281`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=35.6; qcov=0.954; evalue=2.54e-132; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=30.4; qcov=0.913; evalue=2.69e-86; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131024186

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057809671.1`
2	Chloroplast	叶绿体	0.20000	`XP_057809671.1`
3	Nucleus	细胞核	0.00000	`XP_057809671.1`
4	Chromosome	染色体	0.00000	`XP_057809671.1`
5	Centromere	着丝粒	0.00000	`XP_057809671.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24536400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B49,B93,C9
`Chr5:24536567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr5:24536586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:24536680`	`GTT`	`G`	2bp_deletion	frameshift_variant	1	D11
`Chr5:24536680`	`GTT`	`G`	2bp_deletion	CDS_variant	1	D11
`Chr5:24536786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr5:24537038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:24537048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,B35,C71,D5
`Chr5:24537250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr5:24537390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B122,C28,C65,C86
`Chr5:24537398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr5:24537448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B35,C71,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809671.1

606 aa

303

606

PPR_3

PPR_2

PPR

PPR_1

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_2

PPR

PF13812 PPR_3 69-125 aa PF13041 PPR_2 80-128 aa PF01535 PPR 85-112 aa PF12854 PPR_1 147-177 aa PF01535 PPR 154-180 aa PF23276 TPR_24 191-312 aa PF13812 PPR_3 210-266 aa PF12854 PPR_1 221-249 aa PF13041 PPR_2 221-270 aa PF01535 PPR 225-253 aa PF12854 PPR_1 253-284 aa PF13041 PPR_2 256-305 aa PF01535 PPR 259-287 aa PF13812 PPR_3 281-337 aa PF12854 PPR_1 290-320 aa PF13041 PPR_2 292-329 aa PF01535 PPR 294-324 aa PF12854 PPR_1 322-352 aa PF13041 PPR_2 326-372 aa PF01535 PPR 329-358 aa PF13812 PPR_3 350-405 aa PF12854 PPR_1 357-386 aa PF01535 PPR 365-393 aa PF12854 PPR_1 392-425 aa PF13041 PPR_2 397-445 aa PF01535 PPR 400-426 aa PF13812 PPR_3 419-476 aa PF12854 PPR_1 429-457 aa PF01535 PPR 434-464 aa PF13812 PPR_3 459-512 aa PF12854 PPR_1 463-493 aa PF13041 PPR_2 466-515 aa PF01535 PPR 469-499 aa PF13812 PPR_3 490-546 aa PF12854 PPR_1 497-530 aa PF13041 PPR_2 501-547 aa PF01535 PPR 505-534 aa PF13041 PPR_2 536-581 aa PF01535 PPR 539-569 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	69	125	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	80	128	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	85	112	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	147	177	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	154	180	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF23276`	TPR_24	Repeat	191	312	2.3e-29	102.7	Pentatricopeptide repeat-containing protein
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	210	266	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	221	249	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	221	270	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	225	253	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	253	284	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	256	305	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	259	287	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	281	337	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	290	320	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	292	329	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	294	324	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	322	352	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	326	372	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	329	358	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	350	405	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	357	386	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	365	393	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	392	425	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	397	445	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	400	426	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	419	476	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	429	457	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	434	464	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	459	512	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	463	493	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	466	515	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	469	499	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13812`	PPR_3	Repeat	490	546	1.8e-50	169.6	Pentatricopeptide repeat domain
`XP_057809671.1`	Pfam	`PF12854`	PPR_1	Repeat	497	530	6.5e-120	391.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	501	547	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	505	534	7.4e-85	274.2	PPR repeat
`XP_057809671.1`	Pfam	`PF13041`	PPR_2	Repeat	536	581	1.1e-130	426.3	PPR repeat family
`XP_057809671.1`	Pfam	`PF01535`	PPR	Repeat	539	569	7.4e-85	274.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953688.1
ATTTATAAATTATACAATATGAAGTGATTTCCATGTTTTTTGTGCAAATAAAGTGATTTCCATCAAACCTCGAACTGGTCAAACAATAAAATGTCACTGCAGTTGCTTTCAACTCATTCTTACCTTTTGAAAAAATAAAATAAAAAATTCTTCCCTATCTTCAACCTCAATCGCACCGAAGAATGAAGATGAGCAGAAGGGCTGCTGTTTCTGCATTTGATCTGATTCATAGAAGAGTATTTGCAGCTTCAGGGTCCCAT...

CDS

1 records

下载 CDS FASTA

LOC131024186
ATGAAGATGAGCAGAAGGGCTGCTGTTTCTGCATTTGATCTGATTCATAGAAGAGTATTTGCAGCTTCAGGGTCCCATAAATCGGGTAATCTCAGTCCTCTATTCTGTCTCTTCTGTTCCTATTTCCACAGTGATAGGCCCTTTCCACCTAAACAGCCCAGAATGGATTTCAGTTGTGTTAAAGAATTAGATGATGCTATTAACTTGTTTCGTTACATGGTGAGAATGCGGCCGCAGCCTTCAGTTTTTTATTTCACGAA...

Protein

1 records

下载 Protein FASTA

XP_057809671.1
MKMSRRAAVSAFDLIHRRVFAASGSHKSGNLSPLFCLFCSYFHSDRPFPPKQPRMDFSCVKELDDAINLFRYMVRMRPQPSVFYFTKLLNVVVKMKHYSTALHMFDEMRQRGAPLNNSTMNTVIHCYCLLKRVNFGFATLGIFFKSGYGPNVATFSILIKGLFLHDKVADAMKLFQKVLDLNLCEPDDVMILTVIDGLCKGGQIIVANDLVHRLERSRWRPNVKAYSVLLDRLCKSGMVDDAFHLLSRMIDKEISPDVFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器