Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002286`

染色体: Chr05 坐标: 24623679-24629761 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002286`
名称	SmilChr05G002286
描述	uncharacterized SmilChr05G002286
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24623679 - 24629761 / `-`

ID 对照

NCBI Gene ID	`LOC131024193`
GeneID	`131024193`
locus_tag	`-`
NCBI Name	`LOC131024193`
原始查询	`SmilChr05G002286`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]; symbol=AT3G23530; hit=AT3G23530; species=arabidopsis; confidence=high
产物	Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]; symbol=AT3G23530; hit=AT3G23530; species=arabidopsis; confidence=high
Arabidopsis	`AT3G23530` (AT3G23530) Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932] identity=58.5; qcov=0.997; evalue=0; confidence=high
Rice	`Os12g0267200` - identity=53.8; qcov=0.979; evalue=0; confidence=high
GO	GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF02353 (CMAS); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131024193

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057809686.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057809686.1`
3	Nucleus	细胞核	0.00000	`XP_057809686.1`
4	Chromosome	染色体	0.00000	`XP_057809686.1`
5	Centromere	着丝粒	0.00000	`XP_057809686.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24623872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:24623898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:24624092`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	D8
`Chr5:24624092`	`GTC`	`G`	2bp_deletion	CDS_variant	1	D8
`Chr5:24624235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B21,C47,C50
`Chr5:24624281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr5:24624404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:24624461`	`AT`	`A`	1bp_deletion	frameshift_variant	51	A10,A13,A14,A20,A23,A4,A8,B10,B106,B108,B118,B124,B127,B134,B17,B19,B2,B25,B30,B39,B44,B45,B48,B53,B58,B59,B70,B71,B77,B84,B89,B97,C19,C25,C26,C33,C35,C36,C4,C41,C56,C59,C6,C70,C74,C75,C78,C8,C81,C82,C83
`Chr5:24624465`	`CG`	`C`	1bp_deletion	frameshift_variant	81	A16,A19,A2,A20,A21,A22,A24,A3,A4,A7,B100,B102,B104,B107,B109,B110,B112,B114,B117,B12,B120,B128,B130,B131,B132,B133,B139,B15,B16,B18,B26,B29,B38,B39,B41,B46,B5,B55,B57,B6,B60,B61,B63,B66,B69,B80,B82,B85,B87,B95,C10,C11,C18,C19,C27,C30,C31,C37,C41,C43,C44,C47,C49,C51,C53,C54,C55,C62,C63,C64,C65,C67,C69,C71,C72,C73,C76,C77,C78,C79,C86
`Chr5:24624469`	`G`	`GC`	1bp_insertion	frameshift_variant	81	A16,A19,A2,A20,A21,A22,A24,A3,A4,A7,B100,B102,B104,B107,B109,B110,B112,B114,B117,B12,B120,B128,B130,B131,B132,B133,B139,B15,B16,B18,B26,B29,B38,B39,B41,B46,B5,B55,B57,B6,B60,B61,B63,B66,B69,B80,B82,B85,B87,B95,C10,C11,C18,C19,C27,C30,C31,C37,C41,C43,C44,C47,C49,C51,C53,C54,C55,C62,C63,C64,C65,C67,C69,C71,C72,C73,C76,C77,C78,C79,C86
`Chr5:24624522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B72,B76,B90,C84
`Chr5:24625004`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B131,B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809686.1

765 aa

382

765

CMAS

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF02353 CMAS 471-737 aa PF13489 Methyltransf_23 515-646 aa PF13847 Methyltransf_31 527-646 aa PF13649 Methyltransf_25 532-628 aa PF08242 Methyltransf_12 533-630 aa PF08241 Methyltransf_11 533-632 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809686.1`	Pfam	`PF02353`	CMAS	Family	471	737	2e-73	247.8	Mycolic acid cyclopropane synthetase
`XP_057809686.1`	Pfam	`PF13489`	Methyltransf_23	Domain	515	646	6.2e-10	39.7	Methyltransferase domain
`XP_057809686.1`	Pfam	`PF13847`	Methyltransf_31	Domain	527	646	2.1e-09	38.0	Methyltransferase domain
`XP_057809686.1`	Pfam	`PF13649`	Methyltransf_25	Domain	532	628	1.8e-14	54.9	Methyltransferase domain
`XP_057809686.1`	Pfam	`PF08242`	Methyltransf_12	Domain	533	630	4.3e-10	40.9	Methyltransferase domain
`XP_057809686.1`	Pfam	`PF08241`	Methyltransf_11	Domain	533	632	5.4e-11	43.7	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953703.1
CCTATGTTTTGGCGAAAGAAGGTGTGGATGTGGTGCTGTATGAGAAGGAGAATAGCCTAGGCGGTCAAGCCAAGACTGCTATTGTTCATCACACTCCTCTCGATTTACGTTTCATCATTTTTACTCAGGCTATGTATCCGGAAGTGATGGAACTATTTGAGAGTGTTGGAGTTGAAACTGACGTCTCTGACATTTCATACTCTGTGAGCTTGGATCAAGGCCATGGTTATGAATGGGGCACTCGAAATGGACTCTCCAGT...

CDS

1 records

下载 CDS FASTA

LOC131024193
ATGGGGCACTCGAAATGGACTCTCCAGTTTGTTTGCACAAAAAAGAATGCCCTGAATCCATGGTTTTGGAAAATGATTAGGGAAATCACTAAGTTCAGAGACGACGCCTCTCTTTATGTTGAAGAGCTCGATAACAATCCGGATATTGACCGGAATGAAACGCTGGGGACCTTCGTCCAATCCCGTGGTTACTCTGAGTTATTTCAGAAAGCTTTTCTTATTCCAATTTGTGCTTCTATTTGGTCATGCTCTTCAGCAGT...

Protein

1 records

下载 Protein FASTA

XP_057809686.1
MGHSKWTLQFVCTKKNALNPWFWKMIREITKFRDDASLYVEELDNNPDIDRNETLGTFVQSRGYSELFQKAFLIPICASIWSCSSAVMTFSAYLTLSILRNHDILELLGLTKLTPKWLSRSYVDGIKKELESRGCQVKTNSEIYSVFTNDKGCVITCKDGLEEAYDGCIVAAHAPDTLKILGKHATYDELRILGAFQYACSDIFLHHDEYFMPKIRAAWGSRNFLEIITYWINNVQNICEPGVPFFLTLNPPHTPIKTLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器