Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002288`

染色体: Chr05 坐标: 24664322-24677091 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002288`
名称	SmilChr05G002288
描述	uncharacterized SmilChr05G002288
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24664322 - 24677091 / `-`

ID 对照

NCBI Gene ID	`LOC131024190`
GeneID	`131024190`
locus_tag	`-`
NCBI Name	`LOC131024190`
原始查询	`SmilChr05G002288`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821931]; symbol=AT3G23510; hit=AT3G23510; species=arabidopsis; confidence=high
产物	Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821931]; symbol=AT3G23510; hit=AT3G23510; species=arabidopsis; confidence=high
Arabidopsis	`AT3G23510` (AT3G23510) Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821931] identity=60.5; qcov=0.992; evalue=0; confidence=high
Rice	`Os12g0267200` - identity=55.6; qcov=0.961; evalue=0; confidence=high
GO	GO:0008168 (methyltransferase activity); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF00890 (FAD_binding_2); PF01266 (DAO); PF01494 (FAD_binding_3); PF01593 (Amino_oxidase); PF02353 (CMAS); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF12831 (FAD_oxidored); PF13450 (NAD_binding_8); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131024190

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057809682.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057809682.1`
3	Lipid droplet	脂滴	0.20000	`XP_057809681.1`
4	Nucleus	细胞核	0.00000	`XP_057809682.1`
5	Chromosome	染色体	0.00000	`XP_057809682.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24664531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,C22
`Chr5:24664882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B44,B5,C32,C52,C68
`Chr5:24664893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B49
`Chr5:24665056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:24665097`	`T`	`TC`	1bp_insertion	frameshift_variant	52	A20,A21,A24,A3,A4,A7,B10,B102,B103,B104,B107,B109,B129,B132,B133,B137,B14,B140,B16,B34,B39,B41,B42,B49,B55,B6,B60,B63,B73,B74,B87,B91,C11,C15,C19,C28,C30,C44,C49,C51,C53,C54,C60,C63,C66,C67,C73,C77,C78,C86,D5,D9
`Chr5:24665100`	`GT`	`G`	1bp_deletion	frameshift_variant	52	A20,A21,A24,A3,A4,A7,B10,B102,B103,B104,B107,B109,B129,B132,B133,B137,B14,B140,B16,B34,B39,B41,B42,B49,B55,B6,B60,B63,B73,B74,B87,B91,C11,C15,C19,C28,C30,C44,C49,C51,C53,C54,C60,C63,C66,C67,C73,C77,C78,C86,D5,D9
`Chr5:24665791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:24665912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr5:24666137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,A3
`Chr5:24666632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B26,B61,B64,B8
`Chr5:24667399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,C22
`Chr5:24668272`	`A`	`AT`	1bp_insertion	frameshift_variant	16	A9,B106,B119,B123,B134,B139,B22,B36,B41,B65,B73,B79,B8,B87,C40,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809681.1

860 aa

430

860

DAO

FAD_binding_3

FAD_binding_2

FAD_oxidored

NAD_binding_8

Amino_oxidase

CMAS

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF01266 DAO 3-39 aa PF01494 FAD_binding_3 3-45 aa PF00890 FAD_binding_2 4-41 aa PF12831 FAD_oxidored 4-50 aa PF13450 NAD_binding_8 6-71 aa PF01593 Amino_oxidase 11-275 aa PF02353 CMAS 566-832 aa PF13489 Methyltransf_23 611-742 aa PF13847 Methyltransf_31 622-741 aa PF13649 Methyltransf_25 627-723 aa PF08242 Methyltransf_12 628-725 aa PF08241 Methyltransf_11 628-727 aa

XP_057809682.1

621 aa

310

621

CMAS

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF02353 CMAS 327-593 aa PF13489 Methyltransf_23 372-503 aa PF13847 Methyltransf_31 383-502 aa PF13649 Methyltransf_25 388-484 aa PF08242 Methyltransf_12 389-486 aa PF08241 Methyltransf_11 389-488 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809681.1`	Pfam	`PF01266`	DAO	Domain	3	39	6.4e-10	39.8	FAD dependent oxidoreductase
`XP_057809681.1`	Pfam	`PF01494`	FAD_binding_3	Domain	3	45	2.5e-05	24.4	FAD binding domain
`XP_057809681.1`	Pfam	`PF00890`	FAD_binding_2	Domain	4	41	4.4e-06	26.9	FAD binding domain
`XP_057809681.1`	Pfam	`PF12831`	FAD_oxidored	Family	4	50	2.5e-08	34.4	FAD dependent oxidoreductase
`XP_057809681.1`	Pfam	`PF13450`	NAD_binding_8	Domain	6	71	1.7e-14	54.6	NAD(P)-binding Rossmann-like domain
`XP_057809681.1`	Pfam	`PF01593`	Amino_oxidase	Domain	11	275	1.1e-16	61.9	Flavin containing amine oxidoreductase
`XP_057809681.1`	Pfam	`PF02353`	CMAS	Family	566	832	1.1e-78	265.1	Mycolic acid cyclopropane synthetase
`XP_057809681.1`	Pfam	`PF13489`	Methyltransf_23	Domain	611	742	1.5e-10	41.8	Methyltransferase domain
`XP_057809681.1`	Pfam	`PF13847`	Methyltransf_31	Domain	622	741	1.6e-06	28.7	Methyltransferase domain
`XP_057809681.1`	Pfam	`PF13649`	Methyltransf_25	Domain	627	723	1.2e-13	52.2	Methyltransferase domain
`XP_057809681.1`	Pfam	`PF08242`	Methyltransf_12	Domain	628	725	2.9e-11	44.6	Methyltransferase domain
`XP_057809681.1`	Pfam	`PF08241`	Methyltransf_11	Domain	628	727	9.1e-11	43.0	Methyltransferase domain
`XP_057809682.1`	Pfam	`PF02353`	CMAS	Family	327	593	6e-79	265.9	Mycolic acid cyclopropane synthetase
`XP_057809682.1`	Pfam	`PF13489`	Methyltransf_23	Domain	372	503	1.4e-10	41.9	Methyltransferase domain
`XP_057809682.1`	Pfam	`PF13847`	Methyltransf_31	Domain	383	502	1.2e-06	29.1	Methyltransferase domain
`XP_057809682.1`	Pfam	`PF13649`	Methyltransf_25	Domain	388	484	7.9e-14	52.8	Methyltransferase domain
`XP_057809682.1`	Pfam	`PF08242`	Methyltransf_12	Domain	389	486	1.7e-11	45.4	Methyltransferase domain
`XP_057809682.1`	Pfam	`PF08241`	Methyltransf_11	Domain	389	488	5.9e-11	43.6	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953698.1
ATATTGCTAATCTCACCATACAACTTCACTACAAGGTAAGATGATAAGAGTGGCGGTGATAGGCGGCGGTGTAAGTGGGTTGGCAGCAGCATATGTTTTAGCGAAAGAAGGTGTGGATGTGGTGCTGTATGAGAAGGAGAAGAGTTTAGGTGGTCAAGCCATGACTGCTATTGTTCATGACACTACTCCTTTCGATTTACGTTTTATGATTTTTACTCAGGCTATGTATCCGGAAGTGATGGAACTATTTGAGAGTGTTG...

XM_057953699.1
ATTCCAATTTGTGCTTCTATTTGGTCATGCTCTTCTTCATTAGTGATGACTTTCTCTGCCTATTTAACACTTTCGTTCCTGCGTAATCAGGACACTTTGGAGCTTCTTGGTCTCACTAAACGGCTTACAACGAAATGGCTTTCACAAAGTTATGTCCATGGGGTTGTACTATTACATATAAGGATGGCTCGGAAGAAGCATATGATGGGTGCATAATTGCTGCACATGCTCCAGATGCTCTAAAGATCCTAGGAAAGCAG...

CDS

2 records

下载 CDS FASTA

LOC131024190
ATGATAAGAGTGGCGGTGATAGGCGGCGGTGTAAGTGGGTTGGCAGCAGCATATGTTTTAGCGAAAGAAGGTGTGGATGTGGTGCTGTATGAGAAGGAGAAGAGTTTAGGTGGTCAAGCCATGACTGCTATTGTTCATGACACTACTCCTTTCGATTTACGTTTTATGATTTTTACTCAGGCTATGTATCCGGAAGTGATGGAACTATTTGAGAGTGTTGGAGTTGATACTGACGTCTCTGACATTTCATACTCTGTGAG...

LOC131024190
ATGGCTTTCACAAAGTTATGTCCATGGGGTTGTACTATTACATATAAGGATGGCTCGGAAGAAGCATATGATGGGTGCATAATTGCTGCACATGCTCCAGATGCTCTAAAGATCCTAGGAAAGCAGGCGACATACGATGAATTAAGAATACTTGGTGGTTTTCAATATGCCTACAGTGATATCTTCGTTCACCATGACGAAAATCTGATGCCAAAAACCCGAGGGGCATGGGGCTGGAAGAATTTTCTTGGAATCAACAA...

Protein

2 records

下载 Protein FASTA

XP_057809681.1
MIRVAVIGGGVSGLAAAYVLAKEGVDVVLYEKEKSLGGQAMTAIVHDTTPFDLRFMIFTQAMYPEVMELFESVGVDTDVSDISYSVSLDQGQGYEWGTRNGLSSLFAQKKNMLNPWFWKMIREIIKFRDDASLYVEELDNSPYIDRNETLGTFVQSRGYSELFQKAFLIPICASIWSCSSSLVMTFSAYLTLSFLRNQDTLELLGLTKRLTTKWLSQSYVHGIKKELECRGCQVKINSEIHSVSTCDMGCTITYKDGSEE...

XP_057809682.1
MAFTKLCPWGCTITYKDGSEEAYDGCIIAAHAPDALKILGKQATYDELRILGGFQYAYSDIFVHHDENLMPKTRGAWGWKNFLGINNDKACITYWLNNIQNNSVPFFVTLNPPHTPKHISSKLSTSHPIPSVSASRALSKLNDIQGKRGLWFCGAYQGYGFPEDGVKAGILAANGMLRKHYTFSNNPKCMVLSYLETGACVVVTRFLERFIVTGCLILLEEGGKIFTFQGTNKKNNLKVTLRVHKPQFYWKVAMEADLGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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