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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002315

染色体: Chr05 坐标: 24985066-24990972 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002315
名称SmilChr05G002315
描述pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向24985066 - 24990972 / -

ID 对照

NCBI Gene IDLOC131024220
GeneID131024220
locus_tag-
NCBI NameLOC131024220
原始查询SmilChr05G002315

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g06140%2C mitochondrial-like
ArabidopsisAT5G16860 (AT5G16860)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831549]
identity=33.1; qcov=0.969; evalue=1.71e-109; confidence=low
RiceOs07g0436600
-
identity=44.6; qcov=0.683; evalue=3.8e-124; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131024220

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057809710.1
2 Nucleus 细胞核 0.00000 XP_057809710.1
3 Chromosome 染色体 0.00000 XP_057809710.1
4 Centromere 着丝粒 0.00000 XP_057809710.1
5 Chromatin 染色质 0.00000 XP_057809710.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:24989323 G A EMS_canonical_SNV CDS_variant 1 B103
Chr5:24989752 C T EMS_canonical_SNV CDS_variant 1 B104
Chr5:24989851 C T EMS_canonical_SNV CDS_variant 3 A13,B48,C4
Chr5:24990076 C T EMS_canonical_SNV CDS_variant 1 D10
Chr5:24990671 G A EMS_canonical_SNV CDS_variant 1 B54
Chr5:24990672 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:24990731 C T EMS_canonical_SNV CDS_variant 3 A4,B104,C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809710.1
640 aa
N
1
320
640
PPR
PPR
PPR
PPR
PPR
PPR
PPR
PPR
E_motif
C
PF01535 PPR 101-127 aa PF01535 PPR 175-201 aa PF01535 PPR 204-215 aa PF01535 PPR 286-311 aa PF01535 PPR 314-341 aa PF01535 PPR 386-407 aa PF01535 PPR 416-446 aa PF01535 PPR 491-513 aa PF20431 E_motif 531-592 aa
XP_057809711.1
640 aa
N
1
320
640
PPR
PPR
PPR
PPR
PPR
PPR
PPR
PPR
E_motif
C
PF01535 PPR 101-127 aa PF01535 PPR 175-201 aa PF01535 PPR 204-215 aa PF01535 PPR 286-311 aa PF01535 PPR 314-341 aa PF01535 PPR 386-407 aa PF01535 PPR 416-446 aa PF01535 PPR 491-513 aa PF20431 E_motif 531-592 aa
XP_057809712.1
640 aa
N
1
320
640
PPR
PPR
PPR
PPR
PPR
PPR
PPR
PPR
E_motif
C
PF01535 PPR 101-127 aa PF01535 PPR 175-201 aa PF01535 PPR 204-215 aa PF01535 PPR 286-311 aa PF01535 PPR 314-341 aa PF01535 PPR 386-407 aa PF01535 PPR 416-446 aa PF01535 PPR 491-513 aa PF20431 E_motif 531-592 aa
XP_057809713.1
640 aa
N
1
320
640
PPR
PPR
PPR
PPR
PPR
PPR
PPR
PPR
E_motif
C
PF01535 PPR 101-127 aa PF01535 PPR 175-201 aa PF01535 PPR 204-215 aa PF01535 PPR 286-311 aa PF01535 PPR 314-341 aa PF01535 PPR 386-407 aa PF01535 PPR 416-446 aa PF01535 PPR 491-513 aa PF20431 E_motif 531-592 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809710.1 Pfam PF01535 PPR Repeat 101 127 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 175 201 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 204 215 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 286 311 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 314 341 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 386 407 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 416 446 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF01535 PPR Repeat 491 513 2.6e-47 156.5 PPR repeat
XP_057809710.1 Pfam PF20431 E_motif Repeat 531 592 2.8e-18 66.6 E motif
XP_057809711.1 Pfam PF01535 PPR Repeat 101 127 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 175 201 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 204 215 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 286 311 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 314 341 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 386 407 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 416 446 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF01535 PPR Repeat 491 513 2.6e-47 156.5 PPR repeat
XP_057809711.1 Pfam PF20431 E_motif Repeat 531 592 2.8e-18 66.6 E motif
XP_057809712.1 Pfam PF01535 PPR Repeat 101 127 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 175 201 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 204 215 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 286 311 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 314 341 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 386 407 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 416 446 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF01535 PPR Repeat 491 513 2.6e-47 156.5 PPR repeat
XP_057809712.1 Pfam PF20431 E_motif Repeat 531 592 2.8e-18 66.6 E motif
XP_057809713.1 Pfam PF01535 PPR Repeat 101 127 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 175 201 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 204 215 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 286 311 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 314 341 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 386 407 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 416 446 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF01535 PPR Repeat 491 513 2.6e-47 156.5 PPR repeat
XP_057809713.1 Pfam PF20431 E_motif Repeat 531 592 2.8e-18 66.6 E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057953730.1
TGAATCAATCGTTCCCGCCAATAGATGATAAGCAGCAGCAACGAAGAAAATACGTCTCTTCTCTGCTTATCTCAGGCAACAATTGAGCACCAATTCATATGATCAATATCCCTATGATCCCAGCGCTGAGGGGTTGCTTCAGATCGACCCAGACCAGTTCACTCTTTCATGCTACCGCCACAGAAATTGATCCCTCAATCTCTCTCCTCAAACTGCTTGAACTCTCAATCGAAACCCAATCGCTGAAACTCACCTCTCAA...
XM_057953727.1
TGAATCAATCGTTCCCGCCAATAGATGATAAGCAGCAGCAACGAAGAAAATACGTCTCTTCTCTGCTTATCTCAGGCAACAATTGAGCACCAATTCATATGATCAATATCCCTATGATCCCAGCGCTGAGGGGTTGCTTCAGATCGACCCAGACCAGTTCACTCTTTCATGCTACCGCCACAGAAATTGATCCCTCAATCTCTCTCCTCAAACTGCTTGAACTCTCAATCGAAACCCAATCGCTGAAACTCACCTCTCAA...

CDS

4 records

下载 CDS FASTA
LOC131024220
ATGATCAATATCCCTATGATCCCAGCGCTGAGGGGTTGCTTCAGATCGACCCAGACCAGTTCACTCTTTCATGCTACCGCCACAGAAATTGATCCCTCAATCTCTCTCCTCAAACTGCTTGAACTCTCAATCGAAACCCAATCGCTGAAACTCACCTCTCAATCCCACGCCAGAACTCAGCGCCTGGGCCTCACGCAGCATTCCCTCATCGCGCAGAAGCTCATCTTCTCGTATTGTCAATTCAGACGCCCATTTGATGG...
LOC131024220
ATGATCAATATCCCTATGATCCCAGCGCTGAGGGGTTGCTTCAGATCGACCCAGACCAGTTCACTCTTTCATGCTACCGCCACAGAAATTGATCCCTCAATCTCTCTCCTCAAACTGCTTGAACTCTCAATCGAAACCCAATCGCTGAAACTCACCTCTCAATCCCACGCCAGAACTCAGCGCCTGGGCCTCACGCAGCATTCCCTCATCGCGCAGAAGCTCATCTTCTCGTATTGTCAATTCAGACGCCCATTTGATGG...

Protein

4 records

下载 Protein FASTA
XP_057809710.1
MINIPMIPALRGCFRSTQTSSLFHATATEIDPSISLLKLLELSIETQSLKLTSQSHARTQRLGLTQHSLIAQKLIFSYCQFRRPFDGQSVFDSLLFKNTHVCNTLLSGYGKNKMFRESLDVFRKMCDNSDFGVVDDFTFSVMFKIVGEFGEILLGKMVHGMSLKSGLVLDTVAGNSLMSMYEKCGCFDDSLKVFDEMPLKNVSSWNALISGYAKGSWNSSVCRLGLWDIVREMQMEGLKFDAFTVSTLLSSCGGNGDHGR...
XP_057809711.1
MINIPMIPALRGCFRSTQTSSLFHATATEIDPSISLLKLLELSIETQSLKLTSQSHARTQRLGLTQHSLIAQKLIFSYCQFRRPFDGQSVFDSLLFKNTHVCNTLLSGYGKNKMFRESLDVFRKMCDNSDFGVVDDFTFSVMFKIVGEFGEILLGKMVHGMSLKSGLVLDTVAGNSLMSMYEKCGCFDDSLKVFDEMPLKNVSSWNALISGYAKGSWNSSVCRLGLWDIVREMQMEGLKFDAFTVSTLLSSCGGNGDHGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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