Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002329`

染色体: Chr05 坐标: 25142865-25149601 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002329`
名称	SmilChr05G002329
描述	uncharacterized SmilChr05G002329
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	25142865 - 25149601 / `-`

ID 对照

NCBI Gene ID	`LOC131024232`
GeneID	`131024232`
locus_tag	`-`
NCBI Name	`LOC131024232`
原始查询	`SmilChr05G002329`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleic acid-binding proteins superfamily [Source:NCBI gene (formerly Entrezgene);Acc:820959]; symbol=AT3G17030; hit=AT3G17030; species=arabidopsis; confidence=high
产物	Nucleic acid-binding proteins superfamily [Source:NCBI gene (formerly Entrezgene);Acc:820959]; symbol=AT3G17030; hit=AT3G17030; species=arabidopsis; confidence=high
Arabidopsis	`AT3G17030` (AT3G17030) Nucleic acid-binding proteins superfamily [Source:NCBI gene (formerly Entrezgene);Acc:820959] identity=52.6; qcov=0.999; evalue=0; confidence=high
Rice	`Os03g0832500` - identity=50.9; qcov=0.967; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF17244 (CDC24_OB3); PF17245 (CDC24_OB2); PF17246 (CDC24_OB1)
InterPro	-
eggNOG	-
NR	GeneID:131024232

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809727.1`
2	Chromosome	染色体	1.00000	`XP_057809727.1`
3	Telomere	端粒	0.60000	`XP_057809727.1`
4	Centromere	着丝粒	0.00000	`XP_057809727.1`
5	Chromatin	染色质	0.00000	`XP_057809727.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:25144390`	`T`	`TGA`	2bp_insertion	frameshift_variant	33	A1,A18,A24,A5,B102,B114,B117,B129,B135,B16,B24,B25,B33,B40,B41,B46,B47,B50,B51,B57,B64,B76,B81,B86,B92,C21,C24,C3,C39,C43,C46,C48,D6
`Chr5:25144391`	`T`	`TG`	1bp_insertion	frameshift_variant	33	A1,A18,A24,A5,B102,B114,B117,B129,B135,B16,B24,B25,B33,B40,B41,B46,B47,B50,B51,B57,B64,B76,B81,B86,B92,C21,C24,C3,C39,C43,C46,C48,D6
`Chr5:25148490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,B87
`Chr5:25148529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr5:25149141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,D1
`Chr5:25149183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B23,B33,B68,C48
`Chr5:25149191`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B121
`Chr5:25149191`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr5:25149197`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B121
`Chr5:25149197`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr5:25149360`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B37
`Chr5:25149360`	`TC`	`T`	1bp_deletion	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809727.1

668 aa

334

668

CDC24_OB1

CDC24_OB2

CDC24_OB3

PF17246 CDC24_OB1 37-159 aa PF17245 CDC24_OB2 165-295 aa PF17244 CDC24_OB3 411-627 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809727.1`	Pfam	`PF17246`	CDC24_OB1	Domain	37	159	3.2e-42	144.2	Cell division control protein 24, OB domain 1
`XP_057809727.1`	Pfam	`PF17245`	CDC24_OB2	Domain	165	295	2.4e-46	158.3	Cell division control protein 24, OB domain 2
`XP_057809727.1`	Pfam	`PF17244`	CDC24_OB3	Domain	411	627	4.2e-72	243.2	Cell division control protein 24, OB domain 3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953744.1
ATATAAAGACGATGTAGATATATTTTTATTTTTATTTTTATTTTTATTTCAAAGAAGCATGGGGTTTTGTTGTGTTTCAACTTTCAAATGAGGTTGCAATATAAATAAGTGAAGATCTCCCGCGCTAAAAGAGGACCTACAAAATTCAGAAAACCCGCCATTTCAACTAGGGCTCCGAGCTTCTTTCTCTTGCTCTCTTTAGGTCTGATGAAAATGAGCTCTCCGAATGACGAGGTGATGGACCACTTCACGAGGGAGAA...

CDS

1 records

下载 CDS FASTA

LOC131024232
ATGAAAATGAGCTCTCCGAATGACGAGGTGATGGACCACTTCACGAGGGAGAACGAGCCCACTATGATGGATATCGAGCGATCGGATGCTATCGAAGAAGACGATCCGTTTCTTAAATTCATCGACTACGCTAAATCGATTTTGTACGAGATTGCTGGTCAATCAGAGGAGGAAGACCCCATGCGGTGTCCGAGCTGGAGCTGGATCGCGACTCGGATTCTCAGAACCTGTGTCGCGTATTCGAGCGGCGTGACGCCTGC...

Protein

1 records

下载 Protein FASTA

XP_057809727.1
MKMSSPNDEVMDHFTRENEPTMMDIERSDAIEEDDPFLKFIDYAKSILYEIAGQSEEEDPMRCPSWSWIATRILRTCVAYSSGVTPAILLSELSLAWNEQNKSGAPKKQSDVIAKLKKKHKRGKLANTITIDSIYEKKFLQLSSVIEAIIVDAFVLPGTDICMLTLGDIWSSNTIDLYLHGRFYNIADPRTGLLKKGREVLLTGCYLRISAGSSGCPRLLPTEYFVVLLDEDEDYDAMLLGAQFCADSFSSISLDEVNEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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